Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3072

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3071: 11439 - Hypothetical Protein, at 245578 to 247225 11439 mRNA_3072: 11440 - KOG1203 Predicted dehydrogenase, at 248202 to 249247 11440 mRNA_3073: 11441 - ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,SUPERFAMILY--SSF57667, at 249401 to 250160 11441 mRNA_3074: 11442 - KOG4650 Predicted steroid reductase, at 250206 to 251968 11442

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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247,284 + -1.3
247,294 - 1.2
247,297 + -0.4
247,311 - -0.6
247,313 - -1.7
247,314 + -2.9
247,444 - 0.2
247,467 - -1.0
247,589 - 0.3
247,597 - -0.9
247,599 + 1.3
247,603 - -0.1
247,605 + -3.0
247,615 + -2.1
247,617 - -1.9
247,618 - -1.3
247,620 + 0.4
247,623 + -0.8
247,625 - -1.7
247,745 + -1.1
247,757 + -1.9
247,765 - -0.9
247,771 + -4.4
247,868 + 0.4
247,908 - -1.0
247,917 - 0.9
247,922 + -0.7
248,052 - 0.4
248,054 - -0.6
248,064 + -0.8
248,077 - -0.2
248,381 + 11440 mRNA_3072 0.17 -0.4
248,413 + 11440 mRNA_3072 0.20 -1.4
248,507 + 11440 mRNA_3072 0.29 0.9
248,537 - 11440 mRNA_3072 0.32 -1.3
248,546 + 11440 mRNA_3072 0.33 -2.8
248,651 + 11440 mRNA_3072 0.43 -0.0
248,686 - 11440 mRNA_3072 0.46 -1.0
248,827 - 11440 mRNA_3072 0.60 -2.3
248,923 - 11440 mRNA_3072 0.69 -1.0
248,928 + 11440 mRNA_3072 0.69 -1.3
248,964 + 11440 mRNA_3072 0.73 -2.4
248,973 + 11440 mRNA_3072 0.74 -0.3
249,059 + 11440 mRNA_3072 0.82 -1.7
249,406 + -1.5
249,430 + -2.4
249,552 + 11441 mRNA_3073 0.20 -2.5
249,695 + 11441 mRNA_3073 0.39 -3.7
249,696 - 11441 mRNA_3073 0.39 -1.5
249,701 + 11441 mRNA_3073 0.39 0.1
249,762 - 11441 mRNA_3073 0.47 0.0
249,822 - 11441 mRNA_3073 0.55 1.0
249,841 + 11441 mRNA_3073 0.58 -2.3
249,845 + 11441 mRNA_3073 0.58 -0.7
249,858 + 11441 mRNA_3073 0.60 -0.9
249,860 + 11441 mRNA_3073 0.60 -2.2
249,861 + 11441 mRNA_3073 0.61 -1.2
249,898 + 11441 mRNA_3073 0.65 -1.7
249,927 - 11441 mRNA_3073 0.69 -1.6
249,978 + 11441 mRNA_3073 0.76 -0.7
249,983 - 11441 mRNA_3073 0.77 -1.9
250,002 + 11441 mRNA_3073 0.79 -0.8
250,015 + 11441 mRNA_3073 0.81 0.9
250,017 - 11441 mRNA_3073 0.81 -2.5
250,017 - 11441 mRNA_3073 0.81 -1.2
250,030 - 11441 mRNA_3073 0.83 -2.0
250,132 + -0.5
250,137 - -1.2
250,138 + -2.0
250,143 + -1.6
250,166 - -3.9