Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3069

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3068: 11436 - K02434 gatB, PET112 aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B, at 236980 to 239400 11436 mRNA_3069: 11437 - KOG2505 Ankyrin repeat protein, at 239616 to 241978 11437 mRNA_3070: 11438 - Hypothetical Protein, at 242213 to 243874 11438

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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238,667 + 11436 mRNA_3068 0.70 -0.6
238,754 + 11436 mRNA_3068 0.73 -0.2
239,052 - 11436 mRNA_3068 0.86 0.0
239,159 - -1.3
239,177 + -1.1
239,178 + 0.2
239,181 - -3.0
239,184 - -1.2
239,200 + -1.8
239,206 - -1.4
239,208 - -1.2
239,209 + -0.7
239,211 + -1.4
239,318 + -0.8
239,321 + -1.6
239,335 - -3.2
239,347 - 0.3
239,353 + -0.6
239,365 + -1.3
239,369 - -1.3
239,372 + -1.6
239,474 - -3.2
239,487 - -3.7
239,496 + -0.9
239,496 + -0.4
239,511 + -1.9
239,516 + -0.0
239,521 - 0.1
239,632 - 1.6
239,671 + -1.0
239,671 + 0.1
239,830 + -2.3
239,919 - 11437 mRNA_3069 0.13 -2.2
239,973 + 11437 mRNA_3069 0.15 -0.7
240,355 - 11437 mRNA_3069 0.31 -1.2
240,491 - 11437 mRNA_3069 0.37 -1.7
240,491 - 11437 mRNA_3069 0.37 0.9
240,498 + 11437 mRNA_3069 0.37 1.6
240,637 - 11437 mRNA_3069 0.43 -1.9
240,652 + 11437 mRNA_3069 0.44 -0.3
240,653 + 11437 mRNA_3069 0.44 -1.4
240,734 + 11437 mRNA_3069 0.47 -0.4
240,795 + 11437 mRNA_3069 0.50 -0.4
240,798 - 11437 mRNA_3069 0.50 -1.6
241,052 - 11437 mRNA_3069 0.61 -3.4
241,053 + 11437 mRNA_3069 0.61 -1.9
241,058 - 11437 mRNA_3069 0.61 -0.2
241,480 + 11437 mRNA_3069 0.79 -0.6
241,489 - 11437 mRNA_3069 0.79 -1.9
241,624 - 11437 mRNA_3069 0.85 -1.6
241,884 - -0.0
241,901 + 0.2
242,051 + 1.5
242,545 + 11438 mRNA_3070 0.20 -0.0
242,644 + 11438 mRNA_3070 0.26 -1.7
242,662 - 11438 mRNA_3070 0.27 -1.4
242,963 - 11438 mRNA_3070 0.45 -3.5