Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3063

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3062: 11430 - SUPERFAMILY--SSF49899, at 225232 to 227100 11430 mRNA_3063: 11431 - Hypothetical Protein, at 227293 to 229777 11431 mRNA_3064: 11432 - K17617 CTDNEP1, DULLARD, NEM1 CTD nuclear envelope phosphatase 1, at 229860 to 230752 11432

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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226,346 - 11430 mRNA_3062 0.60 0.9
226,346 - 11430 mRNA_3062 0.60 -2.6
226,460 + 11430 mRNA_3062 0.66 -2.8
226,593 + 11430 mRNA_3062 0.73 -0.6
226,680 + 11430 mRNA_3062 0.77 -1.1
226,730 - 11430 mRNA_3062 0.80 -3.0
226,765 - 11430 mRNA_3062 0.82 -1.6
226,769 - 11430 mRNA_3062 0.82 0.6
226,769 + 11430 mRNA_3062 0.82 -2.3
226,777 + 11430 mRNA_3062 0.83 -0.2
226,865 + 11430 mRNA_3062 0.87 -0.1
226,915 - -1.6
226,915 - -0.4
226,925 + 2.4
227,049 - -2.2
227,068 - -2.3
227,164 - 1.2
227,164 - -0.8
227,188 - -1.9
227,201 - -1.2
227,220 + -2.9
227,240 + -1.0
227,250 - -2.5
227,339 + -0.6
227,618 + 11431 mRNA_3063 0.13 -0.7
227,657 - 11431 mRNA_3063 0.15 -2.6
227,813 - 11431 mRNA_3063 0.21 -2.5
227,938 + 11431 mRNA_3063 0.26 -2.2
228,096 - 11431 mRNA_3063 0.32 -0.5
228,261 - 11431 mRNA_3063 0.39 -0.9
228,417 - 11431 mRNA_3063 0.45 -1.9
228,474 - 11431 mRNA_3063 0.48 -3.6
228,491 - 11431 mRNA_3063 0.48 -1.3
228,792 + 11431 mRNA_3063 0.60 -0.6
228,961 + 11431 mRNA_3063 0.67 -0.9
228,978 - 11431 mRNA_3063 0.68 -3.1
229,109 - 11431 mRNA_3063 0.73 -1.2
229,135 + 11431 mRNA_3063 0.74 -2.5
229,428 + 11431 mRNA_3063 0.86 -0.6
229,618 + -3.2
229,737 + -1.7
229,737 + 0.2
229,829 - -2.1
229,909 - -3.3
229,958 + 11432 mRNA_3064 0.11 -0.7
229,985 - 11432 mRNA_3064 0.14 -2.9
229,999 - 11432 mRNA_3064 0.16 -1.6
230,450 + 11432 mRNA_3064 0.66 -0.9
230,730 - -1.8