Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3060

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3059: 11427 - Hypothetical Protein, at 217589 to 219191 11427 mRNA_3060: 11428 - K13115 CCDC130 coiled-coil domain-containing protein 130, at 219691 to 221317 11428 mRNA_3061: 11429 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 221802 to 224881 11429

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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218,747 + 11427 mRNA_3059 0.72 -2.2
218,798 - 11427 mRNA_3059 0.75 -0.9
218,892 - 11427 mRNA_3059 0.81 -3.0
218,996 + 11427 mRNA_3059 0.88 -1.0
219,037 + -0.5
219,182 - -0.4
219,183 - -1.0
219,309 - -0.7
219,330 - -1.7
219,331 - -4.1
219,346 - -2.3
219,346 - 0.4
219,347 + 0.8
219,451 - -1.4
219,453 + -0.7
219,467 - -0.5
219,484 - -1.9
219,501 - -4.5
219,513 + -2.9
219,624 - -2.0
219,630 + -1.4
219,630 + 1.4
219,637 + -2.6
219,639 + -1.4
219,753 - -2.4
219,759 - -1.9
219,763 + -0.7
219,765 - -1.3
219,768 - -1.3
219,773 + -2.2
219,780 - -1.3
219,902 - 11428 mRNA_3060 0.13 -0.6
219,902 - 11428 mRNA_3060 0.13 -0.8
219,903 + 11428 mRNA_3060 0.13 -0.8
219,908 + 11428 mRNA_3060 0.13 -1.6
219,931 + 11428 mRNA_3060 0.15 -0.7
220,038 - 11428 mRNA_3060 0.21 -1.8
220,082 + 11428 mRNA_3060 0.24 -2.8
220,477 - 11428 mRNA_3060 0.48 -1.0
220,584 - 11428 mRNA_3060 0.55 -0.2
220,591 + 11428 mRNA_3060 0.55 -1.9
220,592 + 11428 mRNA_3060 0.55 -2.3
220,599 - 11428 mRNA_3060 0.56 -2.7
221,253 + -1.0
221,380 - -0.9
221,387 + -0.7
221,397 + -2.3
221,489 - -0.0
221,818 + -2.6
221,962 + -2.1
222,113 + 11429 mRNA_3061 0.10 -1.1
222,222 - 11429 mRNA_3061 0.14 0.4
222,241 - 11429 mRNA_3061 0.14 -1.7
222,268 - 11429 mRNA_3061 0.15 0.0