Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3057

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3056: 11424 - K11290 SET, TAF1, I2PP2A template-activating factor I, at 210409 to 211861 11424 mRNA_3057: 11425 - K02216 CHK1 serine/threonine-protein kinase Chk1, at 212271 to 214660 11425 mRNA_3058: 11426 - Hypothetical Protein, at 214961 to 216563 11426

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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211,331 + 11424 mRNA_3056 0.63 -1.9
211,453 - 11424 mRNA_3056 0.72 -0.4
211,457 + 11424 mRNA_3056 0.72 -0.9
211,472 + 11424 mRNA_3056 0.73 -0.5
211,581 - 11424 mRNA_3056 0.81 -0.0
211,599 - 11424 mRNA_3056 0.82 -2.9
211,599 - 11424 mRNA_3056 0.82 -3.4
211,599 - 11424 mRNA_3056 0.82 -1.0
211,602 - 11424 mRNA_3056 0.82 -1.9
211,766 - -0.9
211,769 + -1.0
211,892 + 0.7
211,898 - -2.9
211,902 + -2.8
211,903 - -2.4
211,920 + 0.1
211,928 + -1.8
211,929 + -1.2
212,035 - 0.6
212,045 - -1.8
212,054 + -1.5
212,059 + 0.1
212,211 - -1.9
212,224 + -2.2
212,226 + -1.3
212,274 - -1.8
212,332 + -1.4
212,334 + -1.6
212,336 - -1.9
212,336 - -2.4
212,339 - 0.5
212,361 + -0.3
212,494 + -4.0
212,506 - 2.0
212,604 - 11425 mRNA_3057 0.14 0.7
212,705 - 11425 mRNA_3057 0.18 -0.3
212,748 + 11425 mRNA_3057 0.20 -2.3
212,802 + 11425 mRNA_3057 0.22 -0.8
212,941 + 11425 mRNA_3057 0.28 -1.7
213,090 - 11425 mRNA_3057 0.34 -2.6
213,116 - 11425 mRNA_3057 0.35 -1.5
213,129 - 11425 mRNA_3057 0.36 -3.9
213,470 + 11425 mRNA_3057 0.50 -0.1
213,496 + 11425 mRNA_3057 0.51 -3.2
213,652 + 11425 mRNA_3057 0.58 0.3
213,782 - 11425 mRNA_3057 0.63 -1.9
213,807 + 11425 mRNA_3057 0.64 -0.5
213,813 - 11425 mRNA_3057 0.65 -2.1
213,814 - 11425 mRNA_3057 0.65 -1.7
213,989 - 11425 mRNA_3057 0.72 -1.8
213,994 + 11425 mRNA_3057 0.72 -2.4
214,072 + 11425 mRNA_3057 0.75 -2.8
214,224 - 11425 mRNA_3057 0.82 -0.5
214,238 - 11425 mRNA_3057 0.82 -3.6
214,243 + 11425 mRNA_3057 0.83 -0.6
214,523 + -2.8
214,665 + -1.8
214,696 + -0.9
214,932 + -0.7
214,987 + -1.4
214,988 + -1.7
215,019 + -0.6
215,262 - 11426 mRNA_3058 0.19 -0.2
215,363 - 11426 mRNA_3058 0.25 -2.2
215,509 + 11426 mRNA_3058 0.34 -3.0
215,589 - 11426 mRNA_3058 0.39 0.3
215,589 - 11426 mRNA_3058 0.39 0.3
215,589 - 11426 mRNA_3058 0.39 -1.4
215,589 - 11426 mRNA_3058 0.39 0.3
215,595 + 11426 mRNA_3058 0.40 -2.5
215,643 + 11426 mRNA_3058 0.43 -0.4