Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3056

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3055: 11423 - Hypothetical Protein, at 208583 to 210185 11423 mRNA_3056: 11424 - K11290 SET, TAF1, I2PP2A template-activating factor I, at 210409 to 211861 11424 mRNA_3057: 11425 - K02216 CHK1 serine/threonine-protein kinase Chk1, at 212271 to 214660 11425

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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209,458 - 11423 mRNA_3055 0.55 -0.3
209,611 - 11423 mRNA_3055 0.64 -2.2
209,839 + 11423 mRNA_3055 0.78 0.0
209,847 + 11423 mRNA_3055 0.79 0.2
210,000 - 11423 mRNA_3055 0.88 -0.7
210,001 + 11423 mRNA_3055 0.88 -0.8
210,018 + 11423 mRNA_3055 0.90 -1.2
210,149 + -0.9
210,189 - 0.1
210,307 - -1.2
210,320 + -3.1
210,333 + -1.2
210,347 + -1.1
210,410 + -0.6
210,500 + -2.1
210,618 + 11424 mRNA_3056 0.14 -1.3
210,739 + 11424 mRNA_3056 0.23 0.8
210,743 - 11424 mRNA_3056 0.23 -1.1
210,774 - 11424 mRNA_3056 0.25 -1.3
210,913 - 11424 mRNA_3056 0.35 -0.5
210,984 + 11424 mRNA_3056 0.40 -1.2
211,027 + 11424 mRNA_3056 0.43 -1.7
211,181 + 11424 mRNA_3056 0.53 -2.2
211,331 + 11424 mRNA_3056 0.63 -1.9
211,453 - 11424 mRNA_3056 0.72 -0.4
211,457 + 11424 mRNA_3056 0.72 -0.9
211,472 + 11424 mRNA_3056 0.73 -0.5
211,581 - 11424 mRNA_3056 0.81 -0.0
211,599 - 11424 mRNA_3056 0.82 -2.9
211,599 - 11424 mRNA_3056 0.82 -3.4
211,599 - 11424 mRNA_3056 0.82 -1.0
211,602 - 11424 mRNA_3056 0.82 -1.9
211,766 - -0.9
211,769 + -1.0
211,892 + 0.7
211,898 - -2.9
211,902 + -2.8
211,903 - -2.4
211,920 + 0.1
211,928 + -1.8
211,929 + -1.2
212,035 - 0.6
212,045 - -1.8
212,054 + -1.5
212,059 + 0.1
212,211 - -1.9
212,224 + -2.2
212,226 + -1.3
212,274 - -1.8
212,332 + -1.4
212,334 + -1.6
212,336 - -1.9
212,336 - -2.4
212,339 - 0.5
212,361 + -0.3
212,494 + -4.0
212,506 - 2.0
212,604 - 11425 mRNA_3057 0.14 0.7
212,705 - 11425 mRNA_3057 0.18 -0.3
212,748 + 11425 mRNA_3057 0.20 -2.3
212,802 + 11425 mRNA_3057 0.22 -0.8