Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3053

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3052: 11420 - KOG2404 Fumarate reductase, flavoprotein subunit, at 201580 to 204661 11420 mRNA_3053: 11421 - K06889 K06889 uncharacterized protein, at 205361 to 206848 11421 mRNA_3054: 11422 - Hypothetical Protein, at 207270 to 207722 11422

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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204,386 - -1.5
204,389 - -2.8
204,390 + 0.3
204,393 - -3.9
204,396 + -0.5
204,398 - -2.2
204,399 - -2.5
204,404 - -2.9
204,411 + -3.2
204,411 - 0.1
204,412 + 0.0
204,412 - -1.8
204,427 - -1.7
204,428 + -1.1
204,436 - -2.2
204,438 - -1.0
204,463 + -1.1
204,479 + -1.8
204,531 - -3.1
204,534 - 0.0
204,544 - -1.1
204,547 + -0.2
204,553 - -0.2
204,575 - -1.3
204,692 + -3.0
204,728 + -0.7
204,868 + -2.7
204,881 - -0.9
204,890 + -0.5
204,900 + -0.7
204,904 + 0.2
204,998 + -1.7
205,022 - 0.6
205,028 - -2.1
205,028 - -1.1
205,029 + -0.0
205,043 - -1.5
205,047 + -1.7
205,047 + 0.8
205,050 - 0.5
205,051 - 0.3
205,054 + 0.1
205,056 + -0.6
205,057 - -2.4
205,062 + -1.2
205,067 + -1.4
205,068 + -0.5
205,068 + -2.1
205,068 + -0.9
205,070 + 0.5
205,070 + 0.1
205,076 + -2.1
205,077 + -1.0
205,081 + -3.8
205,088 - -2.5
205,091 + -1.0
205,091 - -2.3
205,094 + -1.2
205,104 - -0.6
205,104 + -2.1
205,136 - -0.0
205,144 + -0.3
205,147 - -2.2
205,157 - -2.0
205,158 - -1.1
205,159 - -1.0
205,163 - -0.7
205,269 - -3.4
205,285 - -0.6
205,310 - -2.6
205,312 - -3.0
205,326 - -2.2
205,329 - -1.7
205,330 + -0.7
205,589 - 11421 mRNA_3053 0.15 -2.3
205,592 - 11421 mRNA_3053 0.16 -0.9
205,594 + 11421 mRNA_3053 0.16 -0.6
205,595 + 11421 mRNA_3053 0.16 -1.3
205,597 + 11421 mRNA_3053 0.16 -2.1
205,612 + 11421 mRNA_3053 0.17 -0.4
205,784 + 11421 mRNA_3053 0.28 -2.2
205,904 - 11421 mRNA_3053 0.36 -0.9
205,906 + 11421 mRNA_3053 0.37 -3.6
206,059 - 11421 mRNA_3053 0.47 -0.4
206,140 + 11421 mRNA_3053 0.52 -3.6
206,322 - 11421 mRNA_3053 0.65 -0.9
206,341 + 11421 mRNA_3053 0.66 -0.8
206,477 - 11421 mRNA_3053 0.75 -2.1
206,496 + 11421 mRNA_3053 0.76 -1.0
206,612 + 11421 mRNA_3053 0.84 -1.1
206,617 - 11421 mRNA_3053 0.84 -0.1
206,718 + 0.1
206,769 - -1.1
206,907 - -1.2
206,912 - -2.4
206,922 + 0.6
206,931 - -2.3
206,938 - -1.5
206,957 + -1.1
206,961 - -2.2
206,971 - -1.9
207,041 - -0.7
207,148 + -0.5
207,238 - -1.0
207,382 + 11422 mRNA_3054 0.25 -1.2
207,382 - 11422 mRNA_3054 0.25 -2.0
207,643 - 11422 mRNA_3054 0.82 0.0
207,643 - 11422 mRNA_3054 0.82 -1.8
207,818 + -3.4