Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3047

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3046: 11414 - Hypothetical Protein, at 184191 to 185834 11414 mRNA_3047: 11415 - K03514 PAPD5_7, TRF4 non-canonical poly(A) RNA polymerase PAPD5/7, at 186454 to 188264 11415 mRNA_3048: 11416 - K03514 PAPD5_7, TRF4 non-canonical poly(A) RNA polymerase PAPD5/7, at 188658 to 190471 11416

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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185,515 + 11414 mRNA_3046 0.81 -2.9
185,618 - 11414 mRNA_3046 0.87 0.1
185,786 + -0.0
185,917 - -3.3
185,976 + -0.8
186,020 - -2.4
186,051 - -0.8
186,187 - -1.2
186,212 - -1.5
186,212 - -2.4
186,226 - -2.0
186,229 + -1.9
186,345 - -0.8
186,359 - -0.4
186,397 + -2.3
186,502 - -1.0
186,503 - -2.1
186,506 + -1.7
186,510 - -0.4
186,526 + -2.3
186,560 + -1.9
186,702 + 11415 mRNA_3047 0.14 -0.2
186,975 - 11415 mRNA_3047 0.29 -1.9
186,981 + 11415 mRNA_3047 0.29 0.1
186,981 + 11415 mRNA_3047 0.29 -0.6
187,085 - 11415 mRNA_3047 0.35 -1.3
187,115 - 11415 mRNA_3047 0.36 -0.4
187,136 + 11415 mRNA_3047 0.38 -3.0
187,272 + 11415 mRNA_3047 0.45 -1.6
187,297 + 11415 mRNA_3047 0.47 -0.8
187,393 + 11415 mRNA_3047 0.52 -0.8
187,393 - 11415 mRNA_3047 0.52 -2.4
187,395 - 11415 mRNA_3047 0.52 -1.5
187,558 - 11415 mRNA_3047 0.61 -0.4
188,007 + 11415 mRNA_3047 0.86 -2.3
188,028 + 11415 mRNA_3047 0.87 -1.4
188,031 - 11415 mRNA_3047 0.87 -0.0
188,130 - 3.0
188,134 - -0.8
188,239 + -0.9
188,275 + -1.1
188,310 + -0.2
188,315 + -1.9
188,424 + -1.1
188,445 + 0.2
188,553 + -1.0
188,555 - -3.8
188,556 - -2.1
188,564 + 0.8
188,571 - 2.1
188,572 + 0.7
188,576 + -1.7
188,583 - -1.2
188,584 + -0.5
188,598 + -1.0
188,615 + -2.3
188,917 + 11416 mRNA_3048 0.14 -2.0
189,041 + 11416 mRNA_3048 0.21 -2.9
189,058 - 11416 mRNA_3048 0.22 -3.2
189,073 - 11416 mRNA_3048 0.23 -2.6
189,075 + 11416 mRNA_3048 0.23 -0.9
189,109 + 11416 mRNA_3048 0.25 -5.1
189,111 - 11416 mRNA_3048 0.25 -1.9
189,122 + 11416 mRNA_3048 0.26 -2.5
189,125 + 11416 mRNA_3048 0.26 -1.0
189,127 - 11416 mRNA_3048 0.26 0.1
189,130 - 11416 mRNA_3048 0.26 -0.3
189,139 - 11416 mRNA_3048 0.27 0.5
189,145 - 11416 mRNA_3048 0.27 -1.5
189,151 - 11416 mRNA_3048 0.27 -1.4
189,153 - 11416 mRNA_3048 0.27 -0.7
189,156 - 11416 mRNA_3048 0.27 -2.2
189,157 + 11416 mRNA_3048 0.28 -0.4
189,157 + 11416 mRNA_3048 0.28 -2.0
189,158 - 11416 mRNA_3048 0.28 -0.8
189,165 + 11416 mRNA_3048 0.28 0.8
189,166 + 11416 mRNA_3048 0.28 -0.2
189,173 + 11416 mRNA_3048 0.28 -2.1
189,179 + 11416 mRNA_3048 0.29 -0.1
189,202 + 11416 mRNA_3048 0.30 0.5
189,205 - 11416 mRNA_3048 0.30 -1.1
189,206 - 11416 mRNA_3048 0.30 0.1
189,228 - 11416 mRNA_3048 0.31 1.2
189,239 + 11416 mRNA_3048 0.32 -0.2
189,246 + 11416 mRNA_3048 0.32 0.9