Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3031

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3030: 11398 - Hypothetical Protein, at 137392 to 137958 11398 mRNA_3031: 11399 - KOG0527 HMG-box transcription factor, at 138430 to 140039 11399 mRNA_3032: 11400 - K09489 HSPA4 heat shock 70kDa protein 4, at 140473 to 143328 11400

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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137,467 - 11398 mRNA_3030 0.13 -1.2
137,521 - 11398 mRNA_3030 0.23 1.0
137,566 - 11398 mRNA_3030 0.31 2.3
137,864 - 11398 mRNA_3030 0.83 -0.5
137,872 - 11398 mRNA_3030 0.85 1.9
137,882 - 11398 mRNA_3030 0.86 0.3
137,918 + -0.8
138,012 - 1.2
139,054 - 11399 mRNA_3031 0.39 -0.0
139,203 + 11399 mRNA_3031 0.48 1.0
139,220 - 11399 mRNA_3031 0.49 -1.7
139,230 - 11399 mRNA_3031 0.50 -1.6
139,261 + 11399 mRNA_3031 0.52 -1.7
139,533 + 11399 mRNA_3031 0.69 -1.1
140,087 - -1.1
140,093 - 1.5
140,254 + -0.6
140,375 + -0.9