Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3026

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3025: 11393 - K11354 cph1 two-component system, chemotaxis family, sensor kinase Cph1, at 123207 to 127605 11393 mRNA_3026: 11394 - Hypothetical Protein, at 128270 to 129253 11394 mRNA_3027: 11395 - HMMPfam-PH domain-PF00169,ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF103657,SUPERFAMILY--SSF50729, at 130169 to 132601 11395

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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127,314 - -3.2
127,707 + -1.0
127,718 + -0.8
127,744 + -1.5
127,809 + -1.0
127,854 + -1.1
127,855 - -2.5
128,204 + -1.0
128,430 - 11394 mRNA_3026 0.16 -2.5
128,464 + 11394 mRNA_3026 0.20 -2.6
128,619 - 11394 mRNA_3026 0.35 -0.1
128,655 - 11394 mRNA_3026 0.39 -0.5
128,720 - 11394 mRNA_3026 0.46 -2.3
128,789 + 11394 mRNA_3026 0.53 -1.9
128,794 - 11394 mRNA_3026 0.53 -0.4
128,795 + 11394 mRNA_3026 0.53 -1.4
128,915 - 11394 mRNA_3026 0.66 -2.0
128,927 + 11394 mRNA_3026 0.67 -1.0
128,943 - 11394 mRNA_3026 0.68 -0.8
128,943 - 11394 mRNA_3026 0.68 -2.2
128,948 + 11394 mRNA_3026 0.69 -0.9
129,071 - 11394 mRNA_3026 0.81 -1.3
129,092 - 11394 mRNA_3026 0.84 -0.7
129,096 + 11394 mRNA_3026 0.84 -1.0
129,226 - 0.2
129,239 + -1.8
129,276 - -1.7
129,370 + -1.7
129,594 - -0.1
129,687 + -0.3
129,811 + -2.8
129,987 - -0.6