Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3025

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3024: 11392 - K20366 ERGIC2, ERV41 endoplasmic reticulum-Golgi intermediate compartment protein 2, at 121077 to 122686 11392 mRNA_3025: 11393 - K11354 cph1 two-component system, chemotaxis family, sensor kinase Cph1, at 123207 to 127605 11393 mRNA_3026: 11394 - Hypothetical Protein, at 128270 to 129253 11394

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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122,423 + 11392 mRNA_3024 0.84 -2.0
122,474 + 11392 mRNA_3024 0.87 -1.0
122,561 + -1.4
122,615 + -0.6
122,615 + -0.5
122,669 - -1.5
122,902 + -0.6
122,918 - -1.5
122,921 + -2.6
123,047 - -1.6
123,060 - -2.4
123,071 + 0.5
123,072 + -1.5
123,194 - -2.1
123,384 + -0.1
123,385 + -0.7
123,403 + -0.5
123,413 + 0.6
123,687 - 11393 mRNA_3025 0.11 -0.9
123,806 + 11393 mRNA_3025 0.14 1.1
123,811 + 11393 mRNA_3025 0.14 0.5
124,050 - 11393 mRNA_3025 0.19 -3.8
124,070 + 11393 mRNA_3025 0.20 -1.9
124,073 + 11393 mRNA_3025 0.20 -2.9
124,078 + 11393 mRNA_3025 0.20 -0.8
124,152 + 11393 mRNA_3025 0.21 -2.8
124,255 + 11393 mRNA_3025 0.24 -0.0
124,299 - 11393 mRNA_3025 0.25 -0.0
124,812 + 11393 mRNA_3025 0.36 -1.5
124,830 + 11393 mRNA_3025 0.37 -0.4
124,833 + 11393 mRNA_3025 0.37 -2.4
125,102 + 11393 mRNA_3025 0.43 -1.7
125,146 + 11393 mRNA_3025 0.44 -1.7
125,538 - 11393 mRNA_3025 0.53 0.0
125,561 - 11393 mRNA_3025 0.54 -1.2
125,660 + 11393 mRNA_3025 0.56 -1.7
125,973 - 11393 mRNA_3025 0.63 -1.0
125,973 - 11393 mRNA_3025 0.63 -1.4
126,264 - 11393 mRNA_3025 0.69 -0.5
126,378 + 11393 mRNA_3025 0.72 -0.8
126,540 - 11393 mRNA_3025 0.76 -4.0
126,601 - 11393 mRNA_3025 0.77 -2.0
126,676 - 11393 mRNA_3025 0.79 -0.7
126,682 - 11393 mRNA_3025 0.79 -0.8
126,751 + 11393 mRNA_3025 0.81 -1.6
126,818 - 11393 mRNA_3025 0.82 -0.8
126,876 - 11393 mRNA_3025 0.83 -3.0
126,947 + 11393 mRNA_3025 0.85 0.5
126,994 + 11393 mRNA_3025 0.86 -0.8
127,111 + 11393 mRNA_3025 0.89 -1.9
127,134 - 11393 mRNA_3025 0.89 -1.9
127,152 - 11393 mRNA_3025 0.90 -1.1
127,162 + 11393 mRNA_3025 0.90 -1.3
127,314 - -3.2
127,707 + -1.0
127,718 + -0.8
127,744 + -1.5
127,809 + -1.0
127,854 + -1.1
127,855 - -2.5
128,204 + -1.0
128,430 - 11394 mRNA_3026 0.16 -2.5
128,464 + 11394 mRNA_3026 0.20 -2.6