Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3021

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3020: 11388 - Hypothetical Protein, at 114693 to 115018 11388 mRNA_3021: 11389 - K00697 otsA trehalose 6-phosphate synthase, at 115343 to 117642 11389 mRNA_3022: 11390 - K12394 AP1S1_2 AP-1 complex subunit sigma 1/2, at 117998 to 118989 11390

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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115,013 + -0.7
115,017 + -0.9
115,071 - -1.7
115,084 + 0.3
115,100 + -2.6
115,101 + -2.0
115,371 + -2.5
116,297 - 11389 mRNA_3021 0.41 -1.4
116,827 - 11389 mRNA_3021 0.65 -2.6
117,458 + 1.1
117,604 - -0.4
117,607 + -2.0
117,612 - -1.6
117,750 - -5.3
117,755 + -2.7
117,758 - -1.5
117,763 - 0.3
117,763 - -1.2
117,763 - -2.1
117,769 - -0.6
117,783 - -0.9
117,793 - -3.7
117,793 - -0.6
117,794 + -2.8
117,794 + 0.2
117,794 + -4.5
117,796 + -1.0
117,797 - -1.5
117,797 + -3.2
117,797 - -2.0
117,800 - -1.6
117,801 + 0.4
117,804 + -1.9
117,914 - -0.3
117,916 - -0.7
117,922 - -1.5
117,924 - -1.8
117,925 + -0.4
117,947 - -1.0
117,948 + -0.6
117,953 - -0.1
117,954 - 1.4
117,957 - -1.2
118,244 - 11390 mRNA_3022 0.25 -0.8