Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3015

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3014: 11382 - K14404 CPSF4, YTH1 cleavage and polyadenylation specificity factor subunit 4, at 78302 to 78988 11382 mRNA_3015: 11383 - KOG3252 Uncharacterized conserved protein, at 79756 to 80863 11383 mRNA_3016: 11384 - Hypothetical Protein, at 81087 to 81376 11384

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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79,367 - -1.6
79,391 + 1.3
79,662 - 0.4
79,670 + -2.1
79,672 + 0.2
79,699 + -3.0
79,720 + -2.5
79,723 + -0.7
79,840 + -3.0
80,281 + 11383 mRNA_3015 0.47 -1.8
80,997 - -1.4
81,015 + -0.9
81,031 - -2.4
81,078 + -0.4
81,106 + 0.4
81,145 - 11384 mRNA_3016 0.20 -0.8
81,153 - 11384 mRNA_3016 0.23 1.3
81,154 + 11384 mRNA_3016 0.23 -1.7
81,203 - 11384 mRNA_3016 0.40 -2.5
81,217 - 11384 mRNA_3016 0.45 -2.1
81,227 + 11384 mRNA_3016 0.48 -0.2
81,229 - 11384 mRNA_3016 0.49 2.0
81,251 + 11384 mRNA_3016 0.57 -1.8
81,258 + 11384 mRNA_3016 0.59 -2.1
81,260 + 11384 mRNA_3016 0.60 -1.7
81,283 + 11384 mRNA_3016 0.68 1.3
81,372 + -1.3
81,398 - -1.5
81,402 + 0.2
81,409 + -2.1
81,409 + -1.7
81,414 + -0.8
81,425 - -4.4
81,432 - -0.9
81,441 + 0.7
81,441 + 0.9
81,519 - -0.6
81,552 - -0.1
81,579 + -2.8
81,732 - -2.7
81,745 - -2.8
81,746 + -0.7
81,748 + -2.2
81,789 - -3.0
81,812 - -2.4