Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3012

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3011: 11379 - K19177 NUS1 dehydrodolichyl diphosphate syntase complex subunit NUS1, at 71270 to 72413 11379 mRNA_3012: 11380 - K06269 PPP1C serine/threonine-protein phosphatase PP1 catalytic subunit, at 72843 to 74660 11380 mRNA_3013: 11381 - KOG1889 Putative phosphoinositide phosphatase, at 74992 to 77769 11381

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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72,484 - -2.3
72,681 - -3.4
72,681 - -0.5
72,688 - -3.7
72,715 - -1.0
72,901 + -2.0
72,950 - -1.8
72,958 - 0.2
72,984 - -3.8
73,415 + 11380 mRNA_3012 0.31 -2.6
73,539 - 11380 mRNA_3012 0.38 -1.2
74,408 - 11380 mRNA_3012 0.86 -0.9
74,570 + -1.0
74,575 - -1.9
74,576 + -3.6
74,584 + -1.7
74,592 + 0.7
74,593 + -2.8
74,598 - -2.6
74,731 + -1.7
74,736 - -2.0
74,760 - -1.5
74,854 - 0.3
74,863 - -0.8
74,882 - -0.3
74,899 + -2.0
74,907 + -0.4
74,907 + 0.6
74,911 - -1.2
74,950 + -0.2
75,026 - -1.7