Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3008

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3007: 11375 - K15119 SLC25A39_40 solute carrier family 25, member 39/40, at 57781 to 59867 11375 mRNA_3008: 11376 - HMMPfam-Inositol hexakisphosphate-PF14566,SUPERFAMILY--SSF52799, at 60118 to 65560 11376 mRNA_3009: 11377 - Hypothetical Protein, at 65747 to 66498 11377

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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60,035 + -1.1
60,203 + 0.4
60,230 + -0.9
60,334 - -1.3
60,402 - -1.3
60,806 - 11376 mRNA_3008 0.13 0.0
60,810 + 11376 mRNA_3008 0.13 -1.9
60,859 - 11376 mRNA_3008 0.14 -1.2
61,216 - 11376 mRNA_3008 0.20 -0.9
61,250 - 11376 mRNA_3008 0.21 -1.2
61,377 - 11376 mRNA_3008 0.23 -1.6
61,399 + 11376 mRNA_3008 0.24 -1.6
61,646 + 11376 mRNA_3008 0.28 -3.2
61,910 + 11376 mRNA_3008 0.33 -1.8
62,411 - 11376 mRNA_3008 0.42 -3.7
62,673 + 11376 mRNA_3008 0.47 0.1
62,674 - 11376 mRNA_3008 0.47 0.4
62,682 + 11376 mRNA_3008 0.47 -1.7
62,728 + 11376 mRNA_3008 0.48 -0.7
62,730 - 11376 mRNA_3008 0.48 -3.2
62,955 - 11376 mRNA_3008 0.52 -1.1
63,159 + 11376 mRNA_3008 0.56 -3.2
63,812 - 11376 mRNA_3008 0.68 -1.9
63,848 - 11376 mRNA_3008 0.69 -4.8
63,980 + 11376 mRNA_3008 0.71 -2.3
63,988 - 11376 mRNA_3008 0.71 -1.9
64,145 - 11376 mRNA_3008 0.74 -2.7
64,169 - 11376 mRNA_3008 0.74 -1.6
64,275 + 11376 mRNA_3008 0.76 -0.5
64,407 - 11376 mRNA_3008 0.79 -1.0
64,626 + 11376 mRNA_3008 0.83 -0.8
64,737 - 11376 mRNA_3008 0.85 -2.2
64,742 - 11376 mRNA_3008 0.85 -3.7
64,977 + 11376 mRNA_3008 0.89 -2.5
65,134 + -0.5
65,145 + -1.3
65,154 - -3.8
65,160 + -3.5
65,185 + -1.2
65,286 - -2.0
65,300 - -1.7
65,314 + -0.7
65,329 - 0.7
65,408 + -1.9
65,414 - -1.8
65,457 - -3.4
65,466 - -0.0
65,570 + -3.3
65,591 + 0.6
65,595 + -0.7
65,601 + -1.0
65,620 + 0.1
65,727 - 0.2
65,758 + 0.3
65,912 - 11377 mRNA_3009 0.22 -0.1
65,913 + 11377 mRNA_3009 0.22 -1.5
65,914 + 11377 mRNA_3009 0.22 0.2
65,918 + 11377 mRNA_3009 0.23 0.8
65,939 - 11377 mRNA_3009 0.26 -2.0
65,941 + 11377 mRNA_3009 0.26 -2.4
66,007 + 11377 mRNA_3009 0.35 -1.6
66,015 - 11377 mRNA_3009 0.36 -3.1
66,018 + 11377 mRNA_3009 0.36 -1.9
66,033 + 11377 mRNA_3009 0.38 -0.3
66,052 - 11377 mRNA_3009 0.41 -0.8
66,073 - 11377 mRNA_3009 0.43 -1.9
66,077 - 11377 mRNA_3009 0.44 -2.8
66,335 - 11377 mRNA_3009 0.78 -1.8