Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3003

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3002: 11370 - HMMPfam-Fungal specific transcription factor domain-PF11951, at 49376 to 50038 11370 mRNA_3003: 11371 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 50625 to 53414 11371 mRNA_3004: 11372 - K12624 LSM5 U6 snRNA-associated Sm-like protein LSm5, at 53581 to 54123 11372

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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49,693 - 11370 mRNA_3002 0.48 1.2
49,694 + 11370 mRNA_3002 0.48 -1.9
49,833 - 11370 mRNA_3002 0.69 -0.6
49,942 + 11370 mRNA_3002 0.85 -3.1
49,948 + 11370 mRNA_3002 0.86 -3.7
49,951 + 11370 mRNA_3002 0.87 -1.5
49,985 - -1.5
49,992 + 0.5
50,269 - -0.1
50,276 - -0.3
50,569 - -3.2
50,611 - -2.5
50,612 - -1.8
50,612 - -1.3
50,612 - -0.9
50,612 - -1.1
50,640 + -1.6
50,723 + -1.3
50,773 + -3.8
50,931 + 11371 mRNA_3003 0.11 -1.5
51,018 - 11371 mRNA_3003 0.14 -1.0
51,026 + 11371 mRNA_3003 0.14 -1.8
51,362 - 11371 mRNA_3003 0.26 -3.1
51,655 + 11371 mRNA_3003 0.37 -1.6
51,734 + 11371 mRNA_3003 0.40 -2.8
51,737 - 11371 mRNA_3003 0.40 -1.3
51,776 + 11371 mRNA_3003 0.41 -1.6
51,791 + 11371 mRNA_3003 0.42 -1.5
51,890 + 11371 mRNA_3003 0.45 -0.1
52,028 - 11371 mRNA_3003 0.50 -1.1
52,176 - 11371 mRNA_3003 0.56 -1.4
52,258 - 11371 mRNA_3003 0.59 -4.6
52,299 - 11371 mRNA_3003 0.60 -2.4
52,427 - 11371 mRNA_3003 0.65 -2.3
52,489 + 11371 mRNA_3003 0.67 -1.6
52,506 - 11371 mRNA_3003 0.67 -3.4
52,515 - 11371 mRNA_3003 0.68 -2.2
52,743 + 11371 mRNA_3003 0.76 -3.0
53,186 - -0.4
53,353 - 1.3
53,484 - -3.1
53,585 - -1.5
54,193 - -2.7
54,311 + 1.6
54,369 - -3.0