Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3002

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3001: 11369 - ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 48202 to 49332 11369 mRNA_3002: 11370 - HMMPfam-Fungal specific transcription factor domain-PF11951, at 49376 to 50038 11370 mRNA_3003: 11371 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 50625 to 53414 11371

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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48,381 - 11369 mRNA_3001 0.16 -1.4
48,387 + 11369 mRNA_3001 0.16 -1.1
48,388 - 11369 mRNA_3001 0.16 -2.9
48,405 - 11369 mRNA_3001 0.18 -1.1
48,405 + 11369 mRNA_3001 0.18 -0.2
48,412 + 11369 mRNA_3001 0.19 0.4
48,414 - 11369 mRNA_3001 0.19 -1.7
48,418 + 11369 mRNA_3001 0.19 -1.8
48,434 + 11369 mRNA_3001 0.21 -2.0
48,489 + 11369 mRNA_3001 0.25 -1.6
48,497 - 11369 mRNA_3001 0.26 -1.8
48,617 + 11369 mRNA_3001 0.37 -0.0
48,686 + 11369 mRNA_3001 0.43 0.5
48,690 - 11369 mRNA_3001 0.43 -0.6
48,778 - 11369 mRNA_3001 0.51 -0.6
49,097 - 11369 mRNA_3001 0.79 -2.3
49,150 - 11369 mRNA_3001 0.84 -1.1
49,152 + 11369 mRNA_3001 0.84 -0.2
49,371 + -2.1
49,518 + 11370 mRNA_3002 0.21 -2.3
49,693 - 11370 mRNA_3002 0.48 1.2
49,694 + 11370 mRNA_3002 0.48 -1.9
49,833 - 11370 mRNA_3002 0.69 -0.6
49,942 + 11370 mRNA_3002 0.85 -3.1
49,948 + 11370 mRNA_3002 0.86 -3.7
49,951 + 11370 mRNA_3002 0.87 -1.5
49,985 - -1.5
49,992 + 0.5
50,269 - -0.1
50,276 - -0.3
50,569 - -3.2
50,611 - -2.5
50,612 - -1.8
50,612 - -1.3
50,612 - -0.9
50,612 - -1.1
50,640 + -1.6
50,723 + -1.3
50,773 + -3.8
50,931 + 11371 mRNA_3003 0.11 -1.5
51,018 - 11371 mRNA_3003 0.14 -1.0
51,026 + 11371 mRNA_3003 0.14 -1.8