Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3000

Experiments: 40 hrs No Buoyancy Separation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2999: 11367 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 43195 to 45486 11367 mRNA_3000: 11368 - K15528 FAAH fatty acid amide hydrolase, at 45858 to 47909 11368 mRNA_3001: 11369 - ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 48202 to 49332 11369

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
remove
44,878 + 11367 mRNA_2999 0.73 -2.9
44,989 - 11367 mRNA_2999 0.78 0.0
44,992 + 11367 mRNA_2999 0.78 -1.3
45,001 + 11367 mRNA_2999 0.79 1.0
45,367 + -0.6
45,429 - -2.0
45,519 + -3.6
45,694 + -0.9
45,700 - -0.8
45,708 - -0.4
45,708 + -2.5
45,711 - -0.5
45,715 + 0.5
45,723 - -0.2
45,729 + -0.0
45,815 - -2.8
45,964 - -2.0
46,145 + 11368 mRNA_3000 0.14 -1.2
46,154 + 11368 mRNA_3000 0.14 -1.0
46,156 + 11368 mRNA_3000 0.15 -1.5
46,174 + 11368 mRNA_3000 0.15 -0.5
46,179 + 11368 mRNA_3000 0.16 -2.8
46,350 - 11368 mRNA_3000 0.24 -1.9
46,457 - 11368 mRNA_3000 0.29 -1.0
46,473 - 11368 mRNA_3000 0.30 -2.7
46,707 + 11368 mRNA_3000 0.41 -0.6
46,761 + 11368 mRNA_3000 0.44 -1.3
47,015 + 11368 mRNA_3000 0.56 -2.6
47,018 - 11368 mRNA_3000 0.57 0.8
47,046 + 11368 mRNA_3000 0.58 -1.8
47,064 + 11368 mRNA_3000 0.59 0.2
47,144 + 11368 mRNA_3000 0.63 -2.0
47,168 - 11368 mRNA_3000 0.64 2.1
47,188 - 11368 mRNA_3000 0.65 -1.1
47,244 - 11368 mRNA_3000 0.68 -0.6
47,246 + 11368 mRNA_3000 0.68 -1.3
47,362 + 11368 mRNA_3000 0.73 -2.1
47,437 + 11368 mRNA_3000 0.77 0.1
47,506 + 11368 mRNA_3000 0.80 -0.9
47,598 - 11368 mRNA_3000 0.85 -0.1
47,608 + 11368 mRNA_3000 0.85 -1.3
47,655 - 11368 mRNA_3000 0.88 0.3
47,730 - -3.2
47,739 + -1.9
47,759 - -2.2
47,867 + -0.0
47,901 + -0.0
47,963 + -1.0
48,035 + -1.2
48,037 - 0.0
48,037 - -0.2
48,062 - -0.4
48,075 - -2.1
48,084 - -0.2
48,085 + 0.3
48,197 - -0.9
48,226 - -2.4
48,227 + -2.6
48,284 + -0.4
48,355 - 11369 mRNA_3001 0.14 -1.6
48,381 - 11369 mRNA_3001 0.16 -1.4
48,387 + 11369 mRNA_3001 0.16 -1.1
48,388 - 11369 mRNA_3001 0.16 -2.9
48,405 - 11369 mRNA_3001 0.18 -1.1
48,405 + 11369 mRNA_3001 0.18 -0.2
48,412 + 11369 mRNA_3001 0.19 0.4
48,414 - 11369 mRNA_3001 0.19 -1.7
48,418 + 11369 mRNA_3001 0.19 -1.8
48,434 + 11369 mRNA_3001 0.21 -2.0
48,489 + 11369 mRNA_3001 0.25 -1.6
48,497 - 11369 mRNA_3001 0.26 -1.8
48,617 + 11369 mRNA_3001 0.37 -0.0
48,686 + 11369 mRNA_3001 0.43 0.5
48,690 - 11369 mRNA_3001 0.43 -0.6
48,778 - 11369 mRNA_3001 0.51 -0.6