Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2999

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2998: 11366 - KOG3383 Uncharacterized conserved protein, at 41514 to 42818 11366 mRNA_2999: 11367 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 43195 to 45486 11367 mRNA_3000: 11368 - K15528 FAAH fatty acid amide hydrolase, at 45858 to 47909 11368

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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42,217 + 11366 mRNA_2998 0.54 0.7
42,221 - 11366 mRNA_2998 0.54 -3.1
42,227 - 11366 mRNA_2998 0.55 -2.0
42,397 + 11366 mRNA_2998 0.68 -1.8
42,602 - 11366 mRNA_2998 0.83 -0.6
42,633 - 11366 mRNA_2998 0.86 -1.3
42,918 + -0.0
43,254 + -0.7
43,254 + -1.7
43,407 + -0.9
43,520 + 11367 mRNA_2999 0.14 -1.6
43,547 - 11367 mRNA_2999 0.15 -0.3
43,832 + 11367 mRNA_2999 0.28 -1.0
43,906 - 11367 mRNA_2999 0.31 -0.8
43,922 + 11367 mRNA_2999 0.32 -1.5
43,970 - 11367 mRNA_2999 0.34 1.0
44,188 - 11367 mRNA_2999 0.43 -2.1
44,259 + 11367 mRNA_2999 0.46 -0.7
44,298 - 11367 mRNA_2999 0.48 -0.2
44,699 - 11367 mRNA_2999 0.66 -0.9
44,786 - 11367 mRNA_2999 0.69 -2.6
44,850 + 11367 mRNA_2999 0.72 -2.7
44,851 - 11367 mRNA_2999 0.72 -1.5
44,878 + 11367 mRNA_2999 0.73 -2.9
44,989 - 11367 mRNA_2999 0.78 0.0
44,992 + 11367 mRNA_2999 0.78 -1.3
45,001 + 11367 mRNA_2999 0.79 1.0
45,367 + -0.6
45,429 - -2.0
45,519 + -3.6
45,694 + -0.9
45,700 - -0.8
45,708 - -0.4
45,708 + -2.5
45,711 - -0.5
45,715 + 0.5
45,723 - -0.2
45,729 + -0.0
45,815 - -2.8
45,964 - -2.0
46,145 + 11368 mRNA_3000 0.14 -1.2
46,154 + 11368 mRNA_3000 0.14 -1.0
46,156 + 11368 mRNA_3000 0.15 -1.5
46,174 + 11368 mRNA_3000 0.15 -0.5
46,179 + 11368 mRNA_3000 0.16 -2.8
46,350 - 11368 mRNA_3000 0.24 -1.9
46,457 - 11368 mRNA_3000 0.29 -1.0
46,473 - 11368 mRNA_3000 0.30 -2.7