Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2994

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2993: 11361 - HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,SUPERFAMILY--SSF50685, at 29624 to 29993 11361 mRNA_2994: 11362 - K14729 FOX2 multifunctional beta-oxidation protein, at 30118 to 34295 11362 mRNA_2995: 11363 - K20290 COG3, SEC34 conserved oligomeric Golgi complex subunit 3, at 34550 to 37704 11363

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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29,212 + -2.5
29,317 + -2.2
29,361 - -1.3
29,390 - -3.6
29,393 + -1.5
29,449 + -1.8
29,479 - 0.7
29,490 + -2.8
29,556 - -4.3
29,690 - 11361 mRNA_2993 0.18 -0.1
29,693 - 11361 mRNA_2993 0.19 -1.0
29,694 - 11361 mRNA_2993 0.19 -2.1
29,802 + 11361 mRNA_2993 0.48 -2.9
29,967 + -2.1
29,999 + -0.5
30,170 - 0.1
30,250 + -0.7
30,385 + -2.0
30,462 + 0.0
30,476 - -2.3
30,478 + -0.7
30,491 + -0.7
30,494 - -0.5
30,499 - -1.7
30,625 - 11362 mRNA_2994 0.12 -0.3
30,712 + 11362 mRNA_2994 0.14 -1.4
30,839 + 11362 mRNA_2994 0.17 -3.3
30,858 + 11362 mRNA_2994 0.18 1.1
30,956 - 11362 mRNA_2994 0.20 1.1
31,074 - 11362 mRNA_2994 0.23 -1.4
31,080 + 11362 mRNA_2994 0.23 0.0
31,080 + 11362 mRNA_2994 0.23 -2.1
31,080 + 11362 mRNA_2994 0.23 -2.7
31,467 + 11362 mRNA_2994 0.32 0.0
31,564 + 11362 mRNA_2994 0.35 -2.2
31,572 + 11362 mRNA_2994 0.35 -1.2
31,580 + 11362 mRNA_2994 0.35 -2.6
31,580 + 11362 mRNA_2994 0.35 -1.9
31,655 + 11362 mRNA_2994 0.37 -1.4
31,873 + 11362 mRNA_2994 0.42 2.5
31,874 - 11362 mRNA_2994 0.42 3.2
32,169 - 11362 mRNA_2994 0.49 -1.4
32,169 - 11362 mRNA_2994 0.49 -1.6
32,314 - 11362 mRNA_2994 0.53 -3.1
32,331 + 11362 mRNA_2994 0.53 -0.2
32,432 - 11362 mRNA_2994 0.55 -1.0
32,596 - 11362 mRNA_2994 0.59 0.5
32,599 + 11362 mRNA_2994 0.59 -0.3
32,601 - 11362 mRNA_2994 0.59 -0.3
32,610 + 11362 mRNA_2994 0.60 -0.7
32,610 + 11362 mRNA_2994 0.60 -2.1
32,727 + 11362 mRNA_2994 0.62 0.3
32,873 - 11362 mRNA_2994 0.66 -1.2
32,912 + 11362 mRNA_2994 0.67 -0.9
32,985 + 11362 mRNA_2994 0.69 0.4
33,149 + 11362 mRNA_2994 0.73 -3.3
33,237 - 11362 mRNA_2994 0.75 -1.1
33,294 - 11362 mRNA_2994 0.76 -3.4
33,306 + 11362 mRNA_2994 0.76 0.2
33,337 + 11362 mRNA_2994 0.77 -3.1
33,361 - 11362 mRNA_2994 0.78 -0.3
33,418 + 11362 mRNA_2994 0.79 -1.5
33,421 - 11362 mRNA_2994 0.79 -0.8
33,504 - 11362 mRNA_2994 0.81 -1.5
33,554 + 11362 mRNA_2994 0.82 -0.8
33,814 + 11362 mRNA_2994 0.88 -2.4
33,902 - -1.6
34,049 - -1.3
34,167 - -0.4
34,189 + -0.8
34,208 + -1.2
34,212 - -1.7
34,217 + 1.4
34,220 + -1.8
34,352 + -0.7
34,355 - -0.6
34,358 + -0.1
34,364 - -1.2
34,371 - -2.0
34,377 + 0.3
34,384 + -1.8
34,387 - -4.0
34,402 + -0.7
34,408 - -1.7
34,421 + -1.4
34,431 + 0.5
34,648 + -0.7
34,697 + -0.1
34,697 + -0.9
35,117 - 11363 mRNA_2995 0.18 -0.7
35,245 - 11363 mRNA_2995 0.22 -0.2
35,247 - 11363 mRNA_2995 0.22 -0.6