Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2990

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2989: 11357 - SUPERFAMILY--SSF103473, at 19979 to 21478 11357 mRNA_2990: 11358 - SUPERFAMILY--SSF52047, at 21801 to 25370 11358 mRNA_2991: 11359 - SUPERFAMILY--SSF50685, at 25748 to 27268 11359

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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20,859 - 11357 mRNA_2989 0.59 -2.6
20,903 + 11357 mRNA_2989 0.62 -1.7
20,914 + 11357 mRNA_2989 0.62 -0.5
21,059 - 11357 mRNA_2989 0.72 -1.3
21,110 + 11357 mRNA_2989 0.75 0.2
21,159 + 11357 mRNA_2989 0.79 -1.1
21,205 - 11357 mRNA_2989 0.82 -0.4
21,205 + 11357 mRNA_2989 0.82 -2.7
21,224 + 11357 mRNA_2989 0.83 -2.1
21,352 - -1.1
21,399 + -2.1
21,484 + -1.3
21,595 - -1.9
21,605 + 0.4
21,679 + -0.9
21,756 - -0.8
22,179 + 11358 mRNA_2990 0.11 -2.6
22,659 - 11358 mRNA_2990 0.24 -0.7
22,668 + 11358 mRNA_2990 0.24 -0.0
23,235 - 11358 mRNA_2990 0.40 -2.3
24,298 - 11358 mRNA_2990 0.70 -1.2
24,705 + 11358 mRNA_2990 0.81 -0.6
25,089 + -1.2
25,386 - -0.0
25,389 - 0.1
25,415 - 0.2
25,430 + -1.3
25,430 + -1.3
25,547 - -0.6
25,560 - -0.5
25,564 - -0.6
25,565 + -0.6
25,569 - -1.3
25,582 + -0.5
25,587 - -0.6
25,588 + -2.1
25,889 - -1.6
26,023 + 11359 mRNA_2991 0.18 -2.0
26,023 + 11359 mRNA_2991 0.18 -2.3
26,148 - 11359 mRNA_2991 0.26 -1.4
26,279 - 11359 mRNA_2991 0.35 -1.5
26,297 + 11359 mRNA_2991 0.36 -1.4