Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2988

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2987: 11355 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 16356 to 17605 11355 mRNA_2988: 11356 - KOG1212 Amidases, at 17852 to 19907 11356 mRNA_2989: 11357 - SUPERFAMILY--SSF103473, at 19979 to 21478 11357

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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16,877 + 11355 mRNA_2987 0.42 0.2
17,017 - 11355 mRNA_2987 0.53 -0.5
17,053 - 11355 mRNA_2987 0.56 -4.7
17,097 + 11355 mRNA_2987 0.59 -1.9
17,100 - 11355 mRNA_2987 0.60 -2.5
17,241 + 11355 mRNA_2987 0.71 -2.0
17,358 - 11355 mRNA_2987 0.80 -2.5
17,483 - -0.2
17,491 - 0.3
17,515 - -1.1
17,546 + -0.1
17,562 + -1.0
17,639 - -1.7
17,641 - -0.4
17,667 + -2.2
17,694 - -1.6
17,832 + -2.8
17,919 - -1.0
17,937 + -0.9
18,027 - -1.4
18,091 + 11356 mRNA_2988 0.12 -1.0
18,144 + 11356 mRNA_2988 0.14 -1.1
18,200 - 11356 mRNA_2988 0.17 -2.0
18,227 + 11356 mRNA_2988 0.18 -1.8
18,253 - 11356 mRNA_2988 0.20 -2.4
18,260 - 11356 mRNA_2988 0.20 -0.7
18,415 - 11356 mRNA_2988 0.27 -1.4
18,576 - 11356 mRNA_2988 0.35 -1.1
18,674 - 11356 mRNA_2988 0.40 -0.2
18,681 - 11356 mRNA_2988 0.40 -0.6
18,720 + 11356 mRNA_2988 0.42 -0.3
18,856 + 11356 mRNA_2988 0.49 -2.6
18,886 + 11356 mRNA_2988 0.50 -1.9
18,917 - 11356 mRNA_2988 0.52 -2.1
19,124 - 11356 mRNA_2988 0.62 -1.9
19,317 + 11356 mRNA_2988 0.71 -1.9
19,338 + 11356 mRNA_2988 0.72 -1.6
19,420 + 11356 mRNA_2988 0.76 -0.6
19,423 + 11356 mRNA_2988 0.76 -2.4
19,574 - 11356 mRNA_2988 0.84 -0.6
19,612 + 11356 mRNA_2988 0.86 -0.4
19,621 + 11356 mRNA_2988 0.86 1.2
19,747 + 0.1
19,778 - -0.4
19,780 + -0.6
19,860 - -3.4
19,900 + -2.3
19,924 + -2.1
19,981 - -1.1
20,043 + -0.8
20,073 + 0.6
20,187 - 11357 mRNA_2989 0.14 -0.7
20,491 - 11357 mRNA_2989 0.34 0.3
20,755 - 11357 mRNA_2989 0.52 0.1
20,760 + 11357 mRNA_2989 0.52 -0.0
20,777 - 11357 mRNA_2989 0.53 -0.0
20,859 - 11357 mRNA_2989 0.59 -2.6
20,903 + 11357 mRNA_2989 0.62 -1.7