Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2987

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2986: 11354 - K19176 FAAH2 fatty acid amide hydrolase 2, at 14214 to 16255 11354 mRNA_2987: 11355 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 16356 to 17605 11355 mRNA_2988: 11356 - KOG1212 Amidases, at 17852 to 19907 11356

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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15,407 + 11354 mRNA_2986 0.58 -1.9
15,452 + 11354 mRNA_2986 0.61 -1.2
15,471 - 11354 mRNA_2986 0.62 -2.0
15,479 + 11354 mRNA_2986 0.62 -1.2
15,544 + 11354 mRNA_2986 0.65 1.0
16,047 - 11354 mRNA_2986 0.90 -2.2
16,304 - -1.1
16,313 + 0.1
16,325 - -0.9
16,332 - -2.4
16,336 - -2.9
16,345 - -2.4
16,371 + -2.5
16,392 + -1.8
16,407 - 0.6
16,417 - -2.6
16,418 + 0.0
16,420 + 0.1
16,475 + -1.1
16,479 + 0.1
16,488 - 11355 mRNA_2987 0.11 0.5
16,520 - 11355 mRNA_2987 0.13 -0.1
16,530 - 11355 mRNA_2987 0.14 2.4
16,605 - 11355 mRNA_2987 0.20 0.2
16,617 + 11355 mRNA_2987 0.21 0.9
16,627 - 11355 mRNA_2987 0.22 -0.6
16,630 - 11355 mRNA_2987 0.22 -2.6
16,631 - 11355 mRNA_2987 0.22 -0.0
16,647 + 11355 mRNA_2987 0.23 -1.1
16,650 - 11355 mRNA_2987 0.24 -1.9
16,778 + 11355 mRNA_2987 0.34 -1.5
16,798 + 11355 mRNA_2987 0.35 0.1
16,807 - 11355 mRNA_2987 0.36 -3.9
16,809 + 11355 mRNA_2987 0.36 -0.3
16,814 + 11355 mRNA_2987 0.37 -2.4
16,822 + 11355 mRNA_2987 0.37 -2.6
16,877 + 11355 mRNA_2987 0.42 0.2
17,017 - 11355 mRNA_2987 0.53 -0.5
17,053 - 11355 mRNA_2987 0.56 -4.7
17,097 + 11355 mRNA_2987 0.59 -1.9
17,100 - 11355 mRNA_2987 0.60 -2.5
17,241 + 11355 mRNA_2987 0.71 -2.0
17,358 - 11355 mRNA_2987 0.80 -2.5
17,483 - -0.2
17,491 - 0.3
17,515 - -1.1
17,546 + -0.1
17,562 + -1.0
17,639 - -1.7
17,641 - -0.4
17,667 + -2.2
17,694 - -1.6
17,832 + -2.8
17,919 - -1.0
17,937 + -0.9
18,027 - -1.4
18,091 + 11356 mRNA_2988 0.12 -1.0
18,144 + 11356 mRNA_2988 0.14 -1.1
18,200 - 11356 mRNA_2988 0.17 -2.0
18,227 + 11356 mRNA_2988 0.18 -1.8
18,253 - 11356 mRNA_2988 0.20 -2.4
18,260 - 11356 mRNA_2988 0.20 -0.7
18,415 - 11356 mRNA_2988 0.27 -1.4
18,576 - 11356 mRNA_2988 0.35 -1.1