Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2986

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2985: 11353 - KOG1203 Predicted dehydrogenase, at 12654 to 13709 11353 mRNA_2986: 11354 - K19176 FAAH2 fatty acid amide hydrolase 2, at 14214 to 16255 11354 mRNA_2987: 11355 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 16356 to 17605 11355

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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13,477 + 11353 mRNA_2985 0.78 -3.8
13,546 + 11353 mRNA_2985 0.84 -0.9
13,885 + -2.6
13,907 - -1.1
13,934 - -0.8
14,076 - -2.6
14,077 - -0.9
14,226 - -0.4
14,237 + 0.5
14,237 + -1.4
14,266 - -4.9
14,358 + -2.1
14,425 - 11354 mRNA_2986 0.10 1.0
14,538 + 11354 mRNA_2986 0.16 -0.6
14,547 + 11354 mRNA_2986 0.16 0.4
14,547 + 11354 mRNA_2986 0.16 -3.1
14,680 + 11354 mRNA_2986 0.23 0.1
14,706 + 11354 mRNA_2986 0.24 -0.6
14,859 + 11354 mRNA_2986 0.32 -2.0
15,153 + 11354 mRNA_2986 0.46 0.4
15,154 - 11354 mRNA_2986 0.46 -1.0
15,241 + 11354 mRNA_2986 0.50 -0.4
15,301 - 11354 mRNA_2986 0.53 0.3
15,407 + 11354 mRNA_2986 0.58 -1.9
15,452 + 11354 mRNA_2986 0.61 -1.2
15,471 - 11354 mRNA_2986 0.62 -2.0
15,479 + 11354 mRNA_2986 0.62 -1.2
15,544 + 11354 mRNA_2986 0.65 1.0
16,047 - 11354 mRNA_2986 0.90 -2.2
16,304 - -1.1
16,313 + 0.1
16,325 - -0.9
16,332 - -2.4
16,336 - -2.9
16,345 - -2.4
16,371 + -2.5
16,392 + -1.8
16,407 - 0.6
16,417 - -2.6
16,418 + 0.0
16,420 + 0.1
16,475 + -1.1
16,479 + 0.1
16,488 - 11355 mRNA_2987 0.11 0.5
16,520 - 11355 mRNA_2987 0.13 -0.1
16,530 - 11355 mRNA_2987 0.14 2.4
16,605 - 11355 mRNA_2987 0.20 0.2
16,617 + 11355 mRNA_2987 0.21 0.9
16,627 - 11355 mRNA_2987 0.22 -0.6
16,630 - 11355 mRNA_2987 0.22 -2.6
16,631 - 11355 mRNA_2987 0.22 -0.0
16,647 + 11355 mRNA_2987 0.23 -1.1
16,650 - 11355 mRNA_2987 0.24 -1.9
16,778 + 11355 mRNA_2987 0.34 -1.5
16,798 + 11355 mRNA_2987 0.35 0.1
16,807 - 11355 mRNA_2987 0.36 -3.9
16,809 + 11355 mRNA_2987 0.36 -0.3
16,814 + 11355 mRNA_2987 0.37 -2.4
16,822 + 11355 mRNA_2987 0.37 -2.6
16,877 + 11355 mRNA_2987 0.42 0.2
17,017 - 11355 mRNA_2987 0.53 -0.5
17,053 - 11355 mRNA_2987 0.56 -4.7
17,097 + 11355 mRNA_2987 0.59 -1.9
17,100 - 11355 mRNA_2987 0.60 -2.5
17,241 + 11355 mRNA_2987 0.71 -2.0