Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2975

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2974: 11342 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 690635 to 692698 11342 mRNA_2975: 11343 - KOG3072 Long chain fatty acid elongase, at 693422 to 694637 11343 mRNA_2976: 11344 - KOG2592 Tumor differentially expressed (TDE) protein, at 694917 to 696801 11344

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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692,552 + 0.9
692,830 + -1.6
692,836 + -2.3
692,841 + -0.2
692,850 + -2.3
692,866 - -0.1
692,867 - -3.7
692,919 + -3.1
692,928 + -0.6
692,929 + -0.7
692,929 - 0.4
692,932 + -1.2
692,935 - -1.3
692,937 - -0.4
692,938 + -1.0
692,941 + -1.4
692,942 + -1.2
692,944 + -2.3
692,944 + -1.3
692,948 - -2.6
692,948 + -0.1
692,951 + -1.7
692,952 + -3.4
692,954 + -1.0
692,957 + -1.9
692,964 - -0.4
692,969 - -1.5
692,983 + -1.0
692,999 - -0.3
693,000 + -1.3
693,002 - -0.6
693,006 + -1.0
693,007 + -2.7
693,173 + -3.7
693,191 - -0.7
693,294 - -1.0
693,454 - -2.0
693,479 + -2.1
693,482 + -4.2
693,631 + 11343 mRNA_2975 0.17 -1.6
693,640 + 11343 mRNA_2975 0.18 -0.0
693,647 - 11343 mRNA_2975 0.19 0.0
693,654 - 11343 mRNA_2975 0.19 -3.7
693,655 + 11343 mRNA_2975 0.19 0.8
693,682 + 11343 mRNA_2975 0.21 -2.2
693,753 + 11343 mRNA_2975 0.27 -2.0
693,878 + 11343 mRNA_2975 0.38 -1.5
693,916 + 11343 mRNA_2975 0.41 -0.1
694,167 + 11343 mRNA_2975 0.61 -4.0
694,224 + 11343 mRNA_2975 0.66 -4.1
694,469 - 11343 mRNA_2975 0.86 0.4
694,567 + -0.5
694,615 - -2.2
694,735 + -2.5
694,738 + -3.1
694,813 - 2.0
695,016 - -0.6
695,025 + -1.2
695,041 - -0.2
695,097 + -1.0
695,607 - 11344 mRNA_2976 0.37 -0.3
695,618 - 11344 mRNA_2976 0.37 -2.1