Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2972

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2971: 11339 - HMMPfam-Anp1-PF03452,SUPERFAMILY--SSF53448, at 684112 to 685866 11339 mRNA_2972: 11340 - K03850 ALG10 alpha-1,2-glucosyltransferase, at 686136 to 688131 11340 mRNA_2973: 11341 - K11996 MOCS3, UBA4 adenylyltransferase and sulfurtransferase, at 688176 to 690178 11341

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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685,174 - 11339 mRNA_2971 0.61 -3.2
685,357 - 11339 mRNA_2971 0.71 -1.4
685,368 + 11339 mRNA_2971 0.72 -1.9
685,374 - 11339 mRNA_2971 0.72 -1.9
685,392 + 11339 mRNA_2971 0.73 -0.5
685,496 - 11339 mRNA_2971 0.79 0.1
685,536 + 11339 mRNA_2971 0.81 -1.0
685,597 + 11339 mRNA_2971 0.85 -3.3
685,598 + 11339 mRNA_2971 0.85 -2.8
685,599 - 11339 mRNA_2971 0.85 -1.1
685,601 - 11339 mRNA_2971 0.85 -2.1
685,601 - 11339 mRNA_2971 0.85 -2.2
685,641 - 11339 mRNA_2971 0.87 -1.1
685,687 - 11339 mRNA_2971 0.90 -3.0
685,688 - 11339 mRNA_2971 0.90 1.1
685,697 - -1.9
685,756 - -0.2
685,778 + 0.3
685,785 + -1.5
685,801 - -1.6
685,812 + -1.4
685,854 + -2.5
685,905 - -1.7
685,958 + -1.7
685,967 + -2.9
685,974 - -3.0
686,118 - -2.5
686,119 - -2.7
686,164 + -0.8
686,164 + 0.0
686,218 - -2.3
686,221 - -2.5
686,281 - -0.4
686,286 + -2.4
686,460 + 11340 mRNA_2972 0.16 -2.0
686,503 - 11340 mRNA_2972 0.18 -2.1
686,542 + 11340 mRNA_2972 0.20 -1.7
686,744 - 11340 mRNA_2972 0.30 -3.2
686,903 + 11340 mRNA_2972 0.38 -1.0
686,951 - 11340 mRNA_2972 0.41 -1.7
687,136 + 11340 mRNA_2972 0.50 -1.2
687,152 + 11340 mRNA_2972 0.51 -1.0
687,175 + 11340 mRNA_2972 0.52 -4.3
687,175 + 11340 mRNA_2972 0.52 -2.0
687,292 + 11340 mRNA_2972 0.58 -2.9
687,292 + 11340 mRNA_2972 0.58 -1.8
687,292 + 11340 mRNA_2972 0.58 -0.6
687,304 + 11340 mRNA_2972 0.59 -2.2
687,325 + 11340 mRNA_2972 0.60 -2.1
687,328 - 11340 mRNA_2972 0.60 -4.0
687,329 + 11340 mRNA_2972 0.60 -1.9
687,408 + 11340 mRNA_2972 0.64 -1.6
687,411 + 11340 mRNA_2972 0.64 -0.7
687,577 - 11340 mRNA_2972 0.72 -0.4
687,577 - 11340 mRNA_2972 0.72 -2.4
687,594 + 11340 mRNA_2972 0.73 -2.2
687,595 - 11340 mRNA_2972 0.73 -2.1
687,599 - 11340 mRNA_2972 0.73 -1.6
687,607 - 11340 mRNA_2972 0.74 -2.0
687,708 - 11340 mRNA_2972 0.79 -2.1
687,763 - 11340 mRNA_2972 0.82 -2.9
687,763 - 11340 mRNA_2972 0.82 -0.3
687,766 + 11340 mRNA_2972 0.82 -3.0
688,004 - -2.5
688,004 - 1.1
688,018 - -0.9
688,031 + -1.6
688,165 + -0.3
688,288 - -2.1
688,289 - -0.6
688,496 + 11341 mRNA_2973 0.16 -3.2
688,575 - 11341 mRNA_2973 0.20 -2.5
688,585 + 11341 mRNA_2973 0.20 -2.7
688,756 - 11341 mRNA_2973 0.29 -2.7
688,901 + 11341 mRNA_2973 0.36 -1.1
689,008 - 11341 mRNA_2973 0.42 -1.6