Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2971

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2970: 11338 - K00219 fadH 2,4-dienoyl-CoA reductase (NADPH2), at 682650 to 684031 11338 mRNA_2971: 11339 - HMMPfam-Anp1-PF03452,SUPERFAMILY--SSF53448, at 684112 to 685866 11339 mRNA_2972: 11340 - K03850 ALG10 alpha-1,2-glucosyltransferase, at 686136 to 688131 11340

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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683,199 - 11338 mRNA_2970 0.40 -2.2
683,290 + 11338 mRNA_2970 0.46 -3.4
683,293 - 11338 mRNA_2970 0.47 -2.5
683,302 + 11338 mRNA_2970 0.47 -1.8
683,322 - 11338 mRNA_2970 0.49 -1.8
683,407 - 11338 mRNA_2970 0.55 -2.6
683,407 - 11338 mRNA_2970 0.55 -1.8
683,408 - 11338 mRNA_2970 0.55 -2.1
683,421 + 11338 mRNA_2970 0.56 -0.6
683,429 - 11338 mRNA_2970 0.56 -2.1
683,595 - 11338 mRNA_2970 0.68 0.1
683,752 + 11338 mRNA_2970 0.80 -1.0
683,787 + 11338 mRNA_2970 0.82 -1.9
683,795 - 11338 mRNA_2970 0.83 -1.4
683,798 + 11338 mRNA_2970 0.83 -0.3
683,844 - 11338 mRNA_2970 0.86 -1.1
683,862 + 11338 mRNA_2970 0.88 -2.1
683,865 - 11338 mRNA_2970 0.88 -0.5
683,896 - -0.7
684,027 - -1.4
684,083 + 0.3
684,294 - 11339 mRNA_2971 0.10 -0.7
684,354 + 11339 mRNA_2971 0.14 -1.8
684,498 + 11339 mRNA_2971 0.22 -2.8
684,604 + 11339 mRNA_2971 0.28 0.9
684,633 + 11339 mRNA_2971 0.30 -0.3
684,642 - 11339 mRNA_2971 0.30 -0.4
684,653 - 11339 mRNA_2971 0.31 -0.0
684,673 + 11339 mRNA_2971 0.32 -3.8
684,778 + 11339 mRNA_2971 0.38 -1.9
684,788 - 11339 mRNA_2971 0.39 1.1
684,816 - 11339 mRNA_2971 0.40 -2.9
684,816 - 11339 mRNA_2971 0.40 0.0
684,819 + 11339 mRNA_2971 0.40 -2.8
684,926 + 11339 mRNA_2971 0.46 -1.3
684,968 - 11339 mRNA_2971 0.49 -2.2
685,026 - 11339 mRNA_2971 0.52 0.6
685,026 - 11339 mRNA_2971 0.52 -1.1
685,029 - 11339 mRNA_2971 0.52 -0.2
685,174 - 11339 mRNA_2971 0.61 -3.2
685,357 - 11339 mRNA_2971 0.71 -1.4
685,368 + 11339 mRNA_2971 0.72 -1.9
685,374 - 11339 mRNA_2971 0.72 -1.9
685,392 + 11339 mRNA_2971 0.73 -0.5
685,496 - 11339 mRNA_2971 0.79 0.1
685,536 + 11339 mRNA_2971 0.81 -1.0
685,597 + 11339 mRNA_2971 0.85 -3.3
685,598 + 11339 mRNA_2971 0.85 -2.8
685,599 - 11339 mRNA_2971 0.85 -1.1
685,601 - 11339 mRNA_2971 0.85 -2.1
685,601 - 11339 mRNA_2971 0.85 -2.2
685,641 - 11339 mRNA_2971 0.87 -1.1
685,687 - 11339 mRNA_2971 0.90 -3.0
685,688 - 11339 mRNA_2971 0.90 1.1
685,697 - -1.9
685,756 - -0.2
685,778 + 0.3
685,785 + -1.5
685,801 - -1.6
685,812 + -1.4
685,854 + -2.5
685,905 - -1.7
685,958 + -1.7
685,967 + -2.9
685,974 - -3.0
686,118 - -2.5
686,119 - -2.7
686,164 + -0.8
686,164 + 0.0
686,218 - -2.3
686,221 - -2.5
686,281 - -0.4
686,286 + -2.4
686,460 + 11340 mRNA_2972 0.16 -2.0
686,503 - 11340 mRNA_2972 0.18 -2.1
686,542 + 11340 mRNA_2972 0.20 -1.7
686,744 - 11340 mRNA_2972 0.30 -3.2