Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2919

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2918: 11286 - HMMPfam-Acetyltransferase (GNAT) domain-PF13523,SMART-Siderophore biosynthesis protein domain-SM01006,SUPERFAMILY--SSF55729, at 554033 to 555107 11286 mRNA_2919: 11287 - BLAST Protein FAM186A [Mus musculus] [Rhizoctonia solani], at 555842 to 558142 11287 mRNA_2920: 11288 - KOG2234 Predicted UDP-galactose transporter, at 558435 to 560436 11288

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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555,123 + -0.8
555,321 + -2.6
555,463 - -0.3
555,478 + 0.5
555,770 + -0.1
555,770 + -2.6
555,773 - 0.1
555,790 + 1.2
555,807 + -1.8
555,940 + -1.6
555,968 + -1.7
556,080 - 11287 mRNA_2919 0.10 -2.5
556,092 + 11287 mRNA_2919 0.11 -1.5
556,237 + 11287 mRNA_2919 0.17 -0.3
556,255 + 11287 mRNA_2919 0.18 -1.3
556,255 + 11287 mRNA_2919 0.18 -1.2
556,273 - 11287 mRNA_2919 0.19 0.3
556,572 + 11287 mRNA_2919 0.32 1.9
556,580 + 11287 mRNA_2919 0.32 -2.0
556,975 + 11287 mRNA_2919 0.49 -1.4
557,134 - 11287 mRNA_2919 0.56 -2.1
557,556 - 11287 mRNA_2919 0.74 0.1
558,003 + 0.1
558,148 + -1.2
558,196 + -2.7
558,299 + -0.5
558,475 - -2.4
558,871 - 11288 mRNA_2920 0.22 -3.3
558,898 + 11288 mRNA_2920 0.23 -3.1
558,977 - 11288 mRNA_2920 0.27 -2.1
558,984 - 11288 mRNA_2920 0.27 -0.1
559,010 + 11288 mRNA_2920 0.29 -0.4