Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2907

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2906: 11274 - K02960 RP-S16e, RPS16 small subunit ribosomal protein S16e, at 508633 to 509349 11274 mRNA_2907: 11275 - HMMPfam-FAD dependent oxidoreductase-PF01266,SUPERFAMILY--SSF51971, at 510278 to 512745 11275 mRNA_2908: 11276 - KOG3098 Uncharacterized conserved protein, at 512850 to 515031 11276

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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509,860 - 0.1
509,883 + -3.7
509,890 + -2.3
509,890 + 1.2
509,893 - 0.5
509,905 + -0.7
509,906 - -2.1
510,070 + -3.5
510,133 + -1.1
510,141 - -0.6
510,141 - -1.7
510,144 + -1.7
510,151 + -0.6
510,157 + -1.5
510,172 + -2.5
510,188 - -0.3
510,194 - 0.1
510,204 - -0.5
510,210 + -0.9
510,223 + -0.1
510,240 + -0.8
510,319 - -2.5
510,334 + -1.0
510,342 + -2.1
510,383 - -1.8
510,395 + -1.7
510,497 - 0.0
511,249 - 11275 mRNA_2907 0.39 -2.2
511,360 - 11275 mRNA_2907 0.44 -4.5
511,686 - 11275 mRNA_2907 0.57 -0.4
511,708 - 11275 mRNA_2907 0.58 -0.0
511,795 + 11275 mRNA_2907 0.61 1.6
512,080 - 11275 mRNA_2907 0.73 -1.9
512,083 + 11275 mRNA_2907 0.73 0.1
512,122 + 11275 mRNA_2907 0.75 -2.2
512,243 - 11275 mRNA_2907 0.80 -0.4
512,542 - -0.9
512,692 + -0.8
512,702 - -3.4
512,941 + -2.7
513,269 - 11276 mRNA_2908 0.19 1.2
513,336 - 11276 mRNA_2908 0.22 -0.0
513,362 - 11276 mRNA_2908 0.23 -0.7
513,382 + 11276 mRNA_2908 0.24 -2.7
513,497 + 11276 mRNA_2908 0.30 0.4
513,531 + 11276 mRNA_2908 0.31 0.8
513,569 + 11276 mRNA_2908 0.33 -0.0
513,571 - 11276 mRNA_2908 0.33 1.2
513,601 - 11276 mRNA_2908 0.34 -1.6
513,617 - 11276 mRNA_2908 0.35 -1.2
513,617 - 11276 mRNA_2908 0.35 0.7
513,624 + 11276 mRNA_2908 0.35 -1.5
513,629 - 11276 mRNA_2908 0.36 -1.8
513,631 + 11276 mRNA_2908 0.36 -4.4
513,640 + 11276 mRNA_2908 0.36 -0.2
513,643 - 11276 mRNA_2908 0.36 -0.6
513,680 + 11276 mRNA_2908 0.38 -0.8
513,683 - 11276 mRNA_2908 0.38 -1.7