Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2901

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2900: 11268 - BLAST pyridoxamine-phosphate oxidase [Moniliophthora ro..., at 493675 to 494245 11268 mRNA_2901: 11269 - KOG1289 Amino acid transporters, at 494917 to 497480 11269 mRNA_2902: 11270 - K20367 ERGIC3, ERV46 endoplasmic reticulum-Golgi intermediate compartment protein 3, at 498164 to 500409 11270

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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494,113 + 11268 mRNA_2900 0.77 -1.0
494,367 + 0.1
494,433 + -1.5
494,489 + -0.4
494,513 + -0.9
494,547 + -0.7
494,604 - 0.2
494,604 - 0.3
494,635 - -0.5
494,646 + 0.0
494,651 + -1.0
494,655 + -2.7
494,655 - -0.4
494,656 + 0.9
494,684 + 1.4
494,684 - -0.3
494,687 - -1.0
494,692 - 0.8
494,699 - -2.6
494,700 - -3.9
494,701 + -2.1
494,717 + -0.2
494,722 - -1.4
494,816 + -1.5
494,818 - 0.3
494,837 - -0.7
494,851 - -3.4
494,861 + 0.7
494,874 + 0.2
494,927 - -1.0
494,988 - -2.3
495,011 - -1.2
495,016 - -2.7
495,052 + -2.0
495,129 - -0.3
495,162 - -1.4
495,276 + 11269 mRNA_2901 0.14 -3.9
495,336 + 11269 mRNA_2901 0.16 -1.7
495,578 - 11269 mRNA_2901 0.26 1.1
495,745 + 11269 mRNA_2901 0.32 -1.7
495,778 - 11269 mRNA_2901 0.34 -1.9
496,459 - 11269 mRNA_2901 0.60 -4.6
496,502 - 11269 mRNA_2901 0.62 1.1
496,591 + 11269 mRNA_2901 0.65 1.5
496,602 - 11269 mRNA_2901 0.66 -1.0
496,713 - 11269 mRNA_2901 0.70 1.0
496,727 + 11269 mRNA_2901 0.71 -0.6
496,786 - 11269 mRNA_2901 0.73 -1.6
497,060 + 11269 mRNA_2901 0.84 -2.8
497,175 - 11269 mRNA_2901 0.88 -2.4
497,180 + 11269 mRNA_2901 0.88 -0.7
497,457 - -2.0
497,725 + -2.7
497,886 + -1.4
497,917 + 0.6
497,935 + -0.7
497,999 - -1.0
498,064 - 0.1
498,101 - -1.0
498,191 - -2.6
498,232 - -0.4