Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2889

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2888: 11256 - KOG1012 Ca2+-dependent lipid-binding protein CLB1/vesicle protein vp115/Granuphilin A, contains C2 domain, at 461121 to 465686 11256 mRNA_2889: 11257 - K08184 SLC16A7 MFS transporter, MCP family, solute carrier family 16 (monocarboxylic acid transporters), member 7, at 466050 to 468099 11257 mRNA_2890: 11258 - HMMPfam-Protein of unknown function (DUF2823)-PF11034, at 468371 to 468835 11258

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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465,112 - 11256 mRNA_2888 0.87 1.7
465,119 + 11256 mRNA_2888 0.88 -0.1
465,129 + 11256 mRNA_2888 0.88 -1.5
465,154 - 11256 mRNA_2888 0.88 -1.8
465,289 + -1.9
465,571 + -1.9
465,846 - -1.7
465,865 + -1.1
465,933 - -0.7
465,968 - 0.3
465,973 + -1.2
465,982 + 0.1
465,983 - -0.6
465,991 + -1.5
466,133 - -1.7
466,153 - -2.2
466,193 + -1.2
466,270 - 11257 mRNA_2889 0.11 0.9
466,271 - 11257 mRNA_2889 0.11 0.1
466,284 + 11257 mRNA_2889 0.11 -2.0
466,706 + 11257 mRNA_2889 0.32 -0.7
466,855 + 11257 mRNA_2889 0.39 -3.4
467,157 - 11257 mRNA_2889 0.54 0.6
467,667 - 11257 mRNA_2889 0.79 -1.3
467,987 - -2.1
468,062 + -2.1
468,202 - -1.9
468,317 - -2.8
468,350 + -2.7
468,589 + 11258 mRNA_2890 0.47 -2.0
468,825 + -0.4