Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2885

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2884: 11252 - K10838 XPC xeroderma pigmentosum group C-complementing protein, at 447802 to 451973 11252 mRNA_2885: 11253 - K20246 EGT1 L-histidine Nalpha-methyltransferase / hercynylcysteine S-oxide synthase, at 452122 to 455835 11253 mRNA_2886: 11254 - Hypothetical Protein, at 456184 to 458722 11254

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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451,256 - 11252 mRNA_2884 0.83 -3.6
451,331 + 11252 mRNA_2884 0.85 -1.4
451,381 - 11252 mRNA_2884 0.86 -1.7
451,416 - 11252 mRNA_2884 0.87 -0.7
451,782 - -2.1
452,113 + -0.8
452,154 + -2.4
452,154 + -2.4
452,264 - -1.7
452,269 + -0.7
453,159 - 11253 mRNA_2885 0.28 -2.1
453,281 - 11253 mRNA_2885 0.31 -2.6
453,304 - 11253 mRNA_2885 0.32 -0.6
453,678 - 11253 mRNA_2885 0.42 0.1
453,701 + 11253 mRNA_2885 0.43 -0.7
453,744 - 11253 mRNA_2885 0.44 -1.6
453,762 + 11253 mRNA_2885 0.44 -0.6
454,012 + 11253 mRNA_2885 0.51 -0.3
454,279 - 11253 mRNA_2885 0.58 0.7
454,321 - 11253 mRNA_2885 0.59 -2.3
454,326 - 11253 mRNA_2885 0.59 0.4
454,481 + 11253 mRNA_2885 0.64 -0.0
454,645 + 11253 mRNA_2885 0.68 -2.3
455,011 - 11253 mRNA_2885 0.78 -0.2
455,017 - 11253 mRNA_2885 0.78 -3.3
455,023 + 11253 mRNA_2885 0.78 -3.6
455,619 + -0.3
455,622 + -1.1
455,749 - 0.5
455,749 - -0.1
455,766 + -1.3
455,883 - -0.6
455,891 - -3.1
455,900 + -1.5
455,905 - -0.8
455,906 + -1.2
455,911 + -0.2
455,924 + -2.6
455,935 + -0.8
455,943 - -2.2
455,945 - -1.6
455,946 + -2.3
456,078 - 0.4
456,096 - -1.2
456,118 - -0.6
456,118 - -3.6
456,150 + 0.3
456,191 - -0.6
456,267 + -1.2
456,287 - -1.0
456,626 - 11254 mRNA_2886 0.17 -3.4