Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2881

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2880: 11248 - K10531 pvdA L-ornithine N5-oxygenase, at 436140 to 438445 11248 mRNA_2881: 11249 - KOG0254 Predicted transporter (major facilitator superfamily), at 439393 to 442330 11249 mRNA_2882: 11250 - Hypothetical Protein, at 443067 to 444033 11250

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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438,405 + -1.2
438,415 + -1.3
438,514 + -0.4
438,519 - -2.6
438,667 - -0.2
438,669 + 0.3
438,702 - -2.1
438,785 - -2.8
438,790 + -1.2
438,816 + 0.1
438,932 - -1.8
438,940 - -3.4
438,954 + 0.4
438,966 - -1.7
438,970 + -1.7
438,972 + -1.4
438,972 + -2.4
438,973 - -1.1
438,976 - -1.2
438,977 - -0.3
438,979 - -2.0
439,006 - -0.4
439,006 - -0.5
439,006 - 0.6
439,020 + -2.0
439,020 - -3.5
439,023 + -2.3
439,031 - -2.0
439,038 - -0.9
439,038 - -2.4
439,039 - -1.7
439,039 - -1.1
439,054 + -0.5
439,111 + -0.5
439,121 - -0.5
439,138 - -2.3
439,231 - -2.2
439,233 - -3.7
439,237 + -2.6
439,242 + -3.6
439,243 - -1.5
439,246 - 0.6
439,257 + -2.2
439,275 + 0.3
439,275 - -3.5
439,284 + -3.2
439,296 + -2.4
439,322 - -0.2
439,326 - -2.0
439,330 + -2.4
439,336 + -1.2
439,337 - -2.3
439,353 + -0.3
439,375 - -1.2
439,475 + -0.4
439,479 + -0.1
439,486 - -0.4
439,493 - 0.3
439,498 - -0.2
439,500 - 0.6
439,504 + -3.0
439,510 + -2.1
439,511 + -0.5
439,514 + 1.1
439,517 + -3.5
439,576 - -2.8
439,579 - -2.4
439,600 - -0.3
439,607 - -0.9
439,613 - -1.1
439,621 + -0.2
439,630 - -0.9
439,639 - -0.9
439,645 - -1.0
439,651 - -1.8
439,667 - -2.2
439,679 - -0.2
439,814 - 11249 mRNA_2881 0.14 -4.0
439,846 - 11249 mRNA_2881 0.15 -0.4
440,057 - 11249 mRNA_2881 0.23 -2.8
440,136 + 11249 mRNA_2881 0.25 -1.8
440,336 + 11249 mRNA_2881 0.32 -2.0
440,519 + 11249 mRNA_2881 0.38 -1.2
440,529 - 11249 mRNA_2881 0.39 -1.6
440,674 - 11249 mRNA_2881 0.44 -1.7
440,677 + 11249 mRNA_2881 0.44 -0.4
440,729 + 11249 mRNA_2881 0.45 -3.1
440,812 - 11249 mRNA_2881 0.48 -4.6
440,979 - 11249 mRNA_2881 0.54 -1.9
441,099 + 11249 mRNA_2881 0.58 -2.9
441,680 - 11249 mRNA_2881 0.78 -2.4
441,834 - 11249 mRNA_2881 0.83 -2.8
442,014 - 11249 mRNA_2881 0.89 -1.8
442,149 - -0.2
442,273 - -0.5
442,279 + -0.1
442,286 - 0.6
442,292 - -1.9
442,375 + -0.2
442,388 - -1.7
442,414 - -0.5
442,434 - -1.2
442,566 - -2.2
442,737 - -2.2
443,016 - -1.6
443,168 + 11250 mRNA_2882 0.10 0.5
443,325 - 11250 mRNA_2882 0.27 -3.3
443,330 - 11250 mRNA_2882 0.27 -1.8