Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2880

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2880: 11248 - K10531 pvdA L-ornithine N5-oxygenase, at 436140 to 438445 11248 mRNA_2881: 11249 - KOG0254 Predicted transporter (major facilitator superfamily), at 439393 to 442330 11249

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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435,639 + -0.4
435,681 - -3.3
435,712 + -0.9
435,719 - -0.6
435,735 - -0.2
435,767 + -2.7
435,857 + -1.4
435,875 + -1.1
435,880 + -2.4
435,947 + 0.2
435,948 - -0.6
436,005 - -0.3
436,012 - -1.1
436,014 + -0.8
436,016 + -1.6
436,023 + -1.1
436,040 - -1.8
436,049 - -3.6
436,058 - -1.1
436,058 + -1.3
436,060 + -2.1
436,063 + -0.2
436,084 - -0.1
436,088 + -2.1
436,185 - -1.8
436,215 - -2.2
436,224 - -2.2
436,225 - -2.3
436,248 + 0.7
436,340 - -0.1
436,357 + -2.0
436,390 + 11248 mRNA_2880 0.11 -0.4
436,514 + 11248 mRNA_2880 0.16 -1.2
436,540 - 11248 mRNA_2880 0.17 -1.8
436,563 + 11248 mRNA_2880 0.18 -0.9
436,576 + 11248 mRNA_2880 0.19 1.3
436,583 - 11248 mRNA_2880 0.19 -2.7
436,584 + 11248 mRNA_2880 0.19 -0.6
436,611 + 11248 mRNA_2880 0.20 -1.7
436,617 - 11248 mRNA_2880 0.21 -2.5
436,674 - 11248 mRNA_2880 0.23 -3.9
436,690 - 11248 mRNA_2880 0.24 -0.7
436,699 + 11248 mRNA_2880 0.24 -0.6
436,706 + 11248 mRNA_2880 0.25 0.2
436,706 - 11248 mRNA_2880 0.25 -1.5
436,711 - 11248 mRNA_2880 0.25 -1.5
436,799 + 11248 mRNA_2880 0.29 -2.1
436,849 - 11248 mRNA_2880 0.31 -1.3
437,158 - 11248 mRNA_2880 0.44 0.7
437,211 + 11248 mRNA_2880 0.46 -1.4
437,289 - 11248 mRNA_2880 0.50 -0.7
437,502 - 11248 mRNA_2880 0.59 -2.5
437,510 + 11248 mRNA_2880 0.59 -2.5
437,602 - 11248 mRNA_2880 0.63 -0.6
437,952 + 11248 mRNA_2880 0.79 0.3
437,964 - 11248 mRNA_2880 0.79 -1.0
438,115 - 11248 mRNA_2880 0.86 -1.2
438,366 - -2.7
438,379 - -0.2
438,391 - -2.3
438,405 + -1.2
438,415 + -1.3
438,514 + -0.4
438,519 - -2.6
438,667 - -0.2
438,669 + 0.3
438,702 - -2.1
438,785 - -2.8
438,790 + -1.2
438,816 + 0.1
438,932 - -1.8
438,940 - -3.4
438,954 + 0.4
438,966 - -1.7
438,970 + -1.7
438,972 + -1.4
438,972 + -2.4
438,973 - -1.1
438,976 - -1.2
438,977 - -0.3
438,979 - -2.0
439,006 - -0.4
439,006 - -0.5
439,006 - 0.6
439,020 + -2.0
439,020 - -3.5
439,023 + -2.3
439,031 - -2.0
439,038 - -0.9
439,038 - -2.4
439,039 - -1.7
439,039 - -1.1
439,054 + -0.5
439,111 + -0.5
439,121 - -0.5
439,138 - -2.3
439,231 - -2.2
439,233 - -3.7
439,237 + -2.6
439,242 + -3.6
439,243 - -1.5
439,246 - 0.6
439,257 + -2.2
439,275 + 0.3
439,275 - -3.5
439,284 + -3.2
439,296 + -2.4
439,322 - -0.2
439,326 - -2.0
439,330 + -2.4
439,336 + -1.2
439,337 - -2.3
439,353 + -0.3
439,375 - -1.2