Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2873

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2872: 11240 - HMMPfam-Pyridine nucleotide-disulphide oxidoreductase-PF00070,PRINTS-FAD-dependent pyridine nucleotide reductase signature-PR00368,PRINTS-Pyridine nucleotide disulphide reductase class-I signature-PR00411,SUPERFAMILY--SSF51905, at 412487 to 414015 11240 mRNA_2873: 11241 - HMMPfam-Yeast cortical protein KAR9-PF08580,ProSiteProfiles-GAR domain profile.-PS51460,SUPERFAMILY--SSF143575, at 414211 to 417159 11241 mRNA_2874: 11242 - K00555 TRMT1, trm1 tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase, at 417421 to 420167 11242

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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413,579 - 11240 mRNA_2872 0.71 0.1
413,636 + 11240 mRNA_2872 0.75 -0.0
413,685 + 11240 mRNA_2872 0.78 1.6
413,763 + 11240 mRNA_2872 0.83 -2.6
413,775 + 11240 mRNA_2872 0.84 -2.0
413,884 + -0.5
414,035 - -2.1
414,053 + -0.9
414,219 - -2.9
414,225 + 0.6
414,313 + -0.3
414,605 - 11241 mRNA_2873 0.13 -2.7
414,720 - 11241 mRNA_2873 0.17 -0.6
414,815 - 11241 mRNA_2873 0.20 -1.9
414,898 + 11241 mRNA_2873 0.23 0.0
415,153 - 11241 mRNA_2873 0.32 -2.5
415,475 + 11241 mRNA_2873 0.43 -3.0
416,056 - 11241 mRNA_2873 0.63 -1.3
416,060 - 11241 mRNA_2873 0.63 0.3
416,080 + 11241 mRNA_2873 0.63 0.3
416,160 + 11241 mRNA_2873 0.66 0.2
416,407 - 11241 mRNA_2873 0.74 -0.0
416,511 - 11241 mRNA_2873 0.78 1.6
416,655 + 11241 mRNA_2873 0.83 0.2
416,776 + 11241 mRNA_2873 0.87 2.3
416,954 + -0.9
417,076 - -2.2
417,083 - -2.6
417,214 - -3.0
417,224 - -1.1
417,232 - -2.7
417,244 + -1.0
417,246 + -0.8
417,250 + -0.4
417,250 - -1.5
417,251 + -0.1
417,252 + -2.2
417,260 - -1.5
417,261 - -1.2
417,380 - 0.0
417,582 + -0.9
417,679 - -0.1
417,713 + 11242 mRNA_2874 0.11 -0.9