Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2868

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2867: 11235 - HMMPfam-GDSL-like Lipase/Acylhydrolase-PF00657,SUPERFAMILY--SSF52266, at 403264 to 404865 11235 mRNA_2868: 11236 - HMMPfam-GDSL-like Lipase/Acylhydrolase-PF00657,SUPERFAMILY--SSF52266, at 405461 to 407348 11236 mRNA_2869: 11237 - KOG4170 2-enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/Peroxisomal 3-ketoacyl-CoA-thiolase, sterol-binding domain and related enzymes, at 407863 to 408924 11237

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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404,502 - 11235 mRNA_2867 0.77 0.2
404,521 - 11235 mRNA_2867 0.78 0.1
404,800 + -2.6
404,829 - -1.7
404,835 + -1.2
404,998 - -0.9
405,001 + -0.0
405,009 - -1.3
405,010 + -1.4
405,020 - 0.4
405,028 + -1.9
405,029 - -1.3
405,049 - -2.8
405,077 - 0.3
405,080 + 1.6
405,130 - 0.4
405,143 - -0.9
405,157 + -0.0
405,162 - -0.7
405,167 + -2.4
405,168 - -0.0
405,186 + 1.0
405,202 + -0.9
405,214 - -1.0
405,229 + -0.2
405,241 - -0.2
405,250 - -0.7
405,262 + 2.0
405,266 + -0.9
405,269 + -1.8
405,274 + -1.5
405,341 + 0.1
405,378 - -0.7
405,383 + -0.2
405,394 + -0.1
405,396 + -0.6
405,936 + 11236 mRNA_2868 0.25 -1.1
405,966 + 11236 mRNA_2868 0.27 -2.4
406,227 - 11236 mRNA_2868 0.41 -2.3
406,232 + 11236 mRNA_2868 0.41 -0.5
406,240 - 11236 mRNA_2868 0.41 -2.7
406,269 + 11236 mRNA_2868 0.43 -1.5
406,544 - 11236 mRNA_2868 0.57 1.7
406,817 + 11236 mRNA_2868 0.72 -1.1
406,837 - 11236 mRNA_2868 0.73 -2.2
406,975 + 11236 mRNA_2868 0.80 -1.8
407,110 - 11236 mRNA_2868 0.87 0.6
407,142 - 11236 mRNA_2868 0.89 0.4
407,248 + -1.0
407,253 + -1.6
407,253 + -1.6
407,254 - -0.1
407,269 + -0.9
407,409 - -2.9
407,419 + -1.9
407,434 + -1.8
407,458 + -1.2
407,480 - 0.2
407,482 - -1.7
407,498 - 0.6
407,505 + 1.4
407,537 - -1.7
407,538 - -2.5
407,546 + -2.0
407,549 - -2.2
407,552 - -2.8
407,552 - 0.1
407,552 - -1.3
407,557 + -0.7
407,558 + -2.9
407,570 - -0.0
407,574 - -1.6
407,693 - -1.2
407,699 - -2.6
407,701 + -0.9
407,715 + -0.6
407,718 + -1.0
407,720 + -1.5
407,736 + -2.8
407,840 - 0.4
407,840 - -2.2
407,844 - 0.5
407,844 - 1.3
407,849 + -1.3
407,859 - -1.7
407,864 + -1.3
407,865 - -0.0
407,868 - -1.5
407,877 - -1.3
408,144 + 11237 mRNA_2869 0.26 -0.4