Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2867

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2866: 11234 - ProSiteProfiles-Myb-like domain profile.-PS50090,SMART-SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains-SM00717,SUPERFAMILY--SSF46689, at 397410 to 402844 11234 mRNA_2867: 11235 - HMMPfam-GDSL-like Lipase/Acylhydrolase-PF00657,SUPERFAMILY--SSF52266, at 403264 to 404865 11235 mRNA_2868: 11236 - HMMPfam-GDSL-like Lipase/Acylhydrolase-PF00657,SUPERFAMILY--SSF52266, at 405461 to 407348 11236

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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402,385 - -2.3
402,389 + -0.3
402,527 + -2.2
402,680 + -1.3
402,973 - -2.5
402,977 + -0.8
403,015 - -1.8
403,389 - 0.1
403,578 + 11235 mRNA_2867 0.20 -0.8
403,931 - 11235 mRNA_2867 0.42 0.2
403,937 + 11235 mRNA_2867 0.42 -0.9
404,086 + 11235 mRNA_2867 0.51 -0.8
404,222 + 11235 mRNA_2867 0.60 -0.6
404,390 - 11235 mRNA_2867 0.70 -1.7
404,502 - 11235 mRNA_2867 0.77 0.2
404,521 - 11235 mRNA_2867 0.78 0.1
404,800 + -2.6
404,829 - -1.7
404,835 + -1.2
404,998 - -0.9
405,001 + -0.0
405,009 - -1.3
405,010 + -1.4
405,020 - 0.4
405,028 + -1.9
405,029 - -1.3
405,049 - -2.8
405,077 - 0.3
405,080 + 1.6
405,130 - 0.4
405,143 - -0.9
405,157 + -0.0
405,162 - -0.7
405,167 + -2.4
405,168 - -0.0
405,186 + 1.0
405,202 + -0.9
405,214 - -1.0
405,229 + -0.2
405,241 - -0.2
405,250 - -0.7
405,262 + 2.0
405,266 + -0.9
405,269 + -1.8
405,274 + -1.5
405,341 + 0.1
405,378 - -0.7
405,383 + -0.2
405,394 + -0.1
405,396 + -0.6