Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2854

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2853: 11221 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 368272 to 370458 11221 mRNA_2854: 11222 - KOG2084 Predicted histone tail methylase containing SET domain, at 371099 to 373142 11222 mRNA_2855: 11223 - K10747 LIG1 DNA ligase 1, at 373741 to 377451 11223

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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370,191 + 11221 mRNA_2853 0.88 -1.9
370,236 + 11221 mRNA_2853 0.90 -3.4
370,240 + 1.4
370,241 - 0.5
370,257 - -2.9
370,356 - -0.4
370,356 - -1.1
370,409 + -0.8
370,418 + -0.0
370,533 + -1.9
370,564 + -2.0
370,565 - -0.9
370,655 + -0.1
370,679 + -0.6
370,686 + -0.7
370,737 + -0.6
370,851 + -0.5
370,864 + -0.8
370,971 - -3.6
370,990 + -1.8
370,993 + -0.6
371,009 - -0.7
371,059 - -4.5
371,177 - -2.2
371,184 - -2.4
371,376 + 11222 mRNA_2854 0.14 -1.5
371,788 + 11222 mRNA_2854 0.34 -0.7
371,902 + 11222 mRNA_2854 0.39 -2.0
371,913 + 11222 mRNA_2854 0.40 -3.8
372,024 - 11222 mRNA_2854 0.45 -1.5
372,308 + 11222 mRNA_2854 0.59 -1.8
372,463 + 11222 mRNA_2854 0.67 -0.6
372,739 - 11222 mRNA_2854 0.80 -3.2
372,781 + 11222 mRNA_2854 0.82 -2.7
372,908 - 11222 mRNA_2854 0.89 -1.2
373,078 - -0.7
373,194 + -3.1
373,210 + -1.1
373,375 - -0.5
373,480 + -0.9
373,537 + 0.8
373,669 - -1.1
373,692 - -1.4
373,819 - 0.1
373,857 + -0.5