Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2833

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2832: 11200 - KOG1611 Predicted short chain-type dehydrogenase, at 319587 to 320810 11200 mRNA_2833: 11201 - KOG0254 Predicted transporter (major facilitator superfamily), at 321440 to 324159 11201 mRNA_2834: 11202 - K01001 ALG7 UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase, at 324460 to 326344 11202

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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320,705 - 0.8
320,714 + 0.8
320,719 - -0.4
320,723 - 0.2
320,781 + -1.5
320,785 - -1.1
320,815 + -3.2
320,857 + 0.2
320,863 + -1.8
320,870 - 0.4
320,974 - -0.9
321,094 + -2.4
321,573 - -1.9
321,592 + -2.0
321,749 + 11201 mRNA_2833 0.11 0.7
321,886 - 11201 mRNA_2833 0.16 -1.5
321,886 - 11201 mRNA_2833 0.16 0.2
322,194 - 11201 mRNA_2833 0.28 -2.1
322,290 + 11201 mRNA_2833 0.31 -0.1
322,314 - 11201 mRNA_2833 0.32 -1.5
322,318 + 11201 mRNA_2833 0.32 -2.1
322,599 - 11201 mRNA_2833 0.43 0.6
322,606 + 11201 mRNA_2833 0.43 -0.5
322,621 + 11201 mRNA_2833 0.43 0.2
322,685 + 11201 mRNA_2833 0.46 0.5
322,905 + 11201 mRNA_2833 0.54 0.2
323,007 + 11201 mRNA_2833 0.58 -1.1
323,320 + 11201 mRNA_2833 0.69 -3.4
323,783 - 11201 mRNA_2833 0.86 -2.2
323,916 - -1.9
323,922 - -3.7
323,926 - -2.0
324,045 - -1.5
324,155 - 0.2
324,179 - -0.8
324,186 - -2.9
324,208 - -2.9
324,209 + -4.0
324,227 + 0.1
324,379 + -1.1
324,427 + -1.4