Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2826

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2825: 11193 - HMMPfam-F-box-like-PF12937, at 306880 to 308238 11193 mRNA_2826: 11194 - HMMPfam-Methyltransferase domain-PF13489,SUPERFAMILY--SSF53335, at 308472 to 309591 11194 mRNA_2827: 11195 - Hypothetical Protein, at 309657 to 312569 11195

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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307,908 - 11193 mRNA_2825 0.76 -0.8
307,921 - 11193 mRNA_2825 0.77 1.4
307,924 - 11193 mRNA_2825 0.77 -2.4
307,927 - 11193 mRNA_2825 0.77 -3.2
307,950 + 11193 mRNA_2825 0.79 -0.8
308,070 - 11193 mRNA_2825 0.88 -0.8
308,071 + 11193 mRNA_2825 0.88 -0.6
308,083 + 11193 mRNA_2825 0.89 -1.4
308,088 - 11193 mRNA_2825 0.89 -0.3
308,091 - 11193 mRNA_2825 0.89 -3.6
308,091 + 11193 mRNA_2825 0.89 0.4
308,198 - -1.3
308,198 - -1.3
308,203 - -2.6
308,209 + -3.0
308,209 + -1.3
308,212 - -0.2
308,213 + -2.8
308,216 + -1.2
308,232 + -3.5
308,245 - -0.4
308,261 - -2.6
308,262 + -0.7
308,359 + -0.1
308,372 + -0.9
308,388 + -2.7
308,395 + -0.8
308,401 + -2.9
308,417 - -2.6
308,418 - -0.2
308,418 + -1.7
308,424 - -1.1
308,431 - -1.6
308,535 + -2.2
308,557 - 0.5
308,569 + -1.6
308,579 + -0.4
308,582 - -2.4
308,583 - -1.4
308,586 - 11194 mRNA_2826 0.10 -2.5
308,589 - 11194 mRNA_2826 0.10 -1.3
308,708 + 11194 mRNA_2826 0.21 -3.4
308,725 - 11194 mRNA_2826 0.23 -2.6
308,870 + 11194 mRNA_2826 0.36 -0.2
308,997 + 11194 mRNA_2826 0.47 -0.4
309,058 + 11194 mRNA_2826 0.52 -2.1
309,177 - 11194 mRNA_2826 0.63 -0.5
309,632 + -2.5
309,714 + -1.4