Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2790

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2788: 11156 - HMMPfam-Protein of unknown function (DUF1183)-PF06682, at 218324 to 218690 11156 mRNA_2789: 11157 - Interpro SOCE-associated regulatory factor of calcium homoeostasis, at 218757 to 219433 11157 mRNA_2790: 11158 - Hypothetical Protein, at 219629 to 222406 11158 mRNA_2791: 11159 - K05544 DUS3 tRNA-dihydrouridine synthase 3, at 222568 to 225746 11159

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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218,723 - 0.3
219,127 - 11157 mRNA_2789 0.55 0.6
219,528 - -0.6
219,830 - -0.3
219,988 - 11158 mRNA_2790 0.13 -0.1
220,046 - 11158 mRNA_2790 0.15 -1.3
220,410 + 11158 mRNA_2790 0.28 -3.3
220,755 - 11158 mRNA_2790 0.41 2.6
221,463 + 11158 mRNA_2790 0.66 -1.2
221,661 + 11158 mRNA_2790 0.73 -0.3
221,753 - 11158 mRNA_2790 0.76 -0.3
221,835 + 11158 mRNA_2790 0.79 -1.1
221,875 + 11158 mRNA_2790 0.81 -2.7
222,068 + 11158 mRNA_2790 0.88 -0.9
222,508 - -0.7
222,521 + -1.2
222,792 + -0.6
223,077 + 11159 mRNA_2791 0.16 2.2
223,258 - 11159 mRNA_2791 0.22 -2.3
223,376 + 11159 mRNA_2791 0.25 -3.1
223,376 + 11159 mRNA_2791 0.25 -1.5