Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2776

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2775: 11143 - KOG1646 40S ribosomal protein S6, at 182277 to 183930 11143 mRNA_2776: 11144 - K14292 TGS1 trimethylguanosine synthase, at 183989 to 185404 11144 mRNA_2777: 11145 - K00948 PRPS, prsA ribose-phosphate pyrophosphokinase, at 186050 to 187746 11145

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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183,056 + 11143 mRNA_2775 0.47 -1.7
183,169 - 11143 mRNA_2775 0.54 0.3
183,291 - 11143 mRNA_2775 0.61 -1.6
183,360 + 11143 mRNA_2775 0.65 -1.1
183,410 + 11143 mRNA_2775 0.69 -0.6
183,868 + -2.4
183,993 - -1.8
184,277 + 11144 mRNA_2776 0.20 -0.4
184,294 + 11144 mRNA_2776 0.22 -1.9
184,446 + 11144 mRNA_2776 0.32 -0.7
184,585 + 11144 mRNA_2776 0.42 -1.8
184,597 - 11144 mRNA_2776 0.43 -2.3
184,880 + 11144 mRNA_2776 0.63 -2.3
184,883 - 11144 mRNA_2776 0.63 -1.9
185,034 + 11144 mRNA_2776 0.74 -0.0
185,047 + 11144 mRNA_2776 0.75 0.7
185,168 - 11144 mRNA_2776 0.83 -1.7
185,168 + 11144 mRNA_2776 0.83 0.5
185,284 + -3.2
185,320 - -2.1
185,323 + -0.9
185,330 + -2.1
185,353 + -0.3
185,359 - -0.5
185,616 - -2.9
185,748 - -0.0
185,754 - -0.9
185,761 + -0.0