Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2771

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2770: 11138 - KOG0400 40S ribosomal protein S13, at 173510 to 175017 11138 mRNA_2771: 11139 - KOG4072 Signal peptidase complex, subunit SPC25, at 175827 to 177001 11139 mRNA_2772: 11140 - SUPERFAMILY--SSF56112, at 177192 to 178295 11140

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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174,870 + -1.9
174,885 - -2.4
175,208 + -1.0
175,595 - -1.6
175,603 + -1.0
175,613 + -1.3
175,733 - -2.7
175,760 - -0.0
175,779 + -2.7
175,795 + -2.0
175,897 - -2.0
175,898 + -0.1
175,909 - -3.5
175,948 + 11139 mRNA_2771 0.10 -1.4
176,015 + 11139 mRNA_2771 0.16 -2.1
176,079 - 11139 mRNA_2771 0.21 0.3
176,203 - 11139 mRNA_2771 0.32 -0.2
176,204 - 11139 mRNA_2771 0.32 -3.6
176,771 - 11139 mRNA_2771 0.80 1.0
177,068 + -1.0
177,259 - -0.9
177,515 - 11140 mRNA_2772 0.29 -1.1
177,566 - 11140 mRNA_2772 0.34 -0.9
177,662 - 11140 mRNA_2772 0.43 -1.0
177,827 + 11140 mRNA_2772 0.58 -0.9
177,832 - 11140 mRNA_2772 0.58 1.1
177,869 - 11140 mRNA_2772 0.61 -3.1
177,974 + 11140 mRNA_2772 0.71 -2.1