Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2768

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2767: 11135 - K10084 EDEM1 ER degradation enhancer, mannosidase alpha-like 1, at 166551 to 170333 11135 mRNA_2768: 11136 - K08681 pdxT, pdx2 5'-phosphate synthase pdxT subunit, at 170479 to 171341 11136 mRNA_2769: 11137 - K06215 pdxS, pdx1 pyridoxal 5'-phosphate synthase pdxS subunit, at 171565 to 173167 11137

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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169,766 - 11135 mRNA_2767 0.85 -2.3
169,779 + 11135 mRNA_2767 0.85 -0.8
169,810 - 11135 mRNA_2767 0.86 -0.9
170,517 - -1.3
170,669 - 11136 mRNA_2768 0.22 -0.6
170,811 - 11136 mRNA_2768 0.38 -2.1
170,952 + 11136 mRNA_2768 0.55 -1.6
170,988 + 11136 mRNA_2768 0.59 -1.3
171,119 - 11136 mRNA_2768 0.74 0.1
171,267 - -0.5
171,300 + -0.7
171,440 - -3.0
171,444 - -4.2
171,478 + 0.6
171,644 + -0.7
171,646 + 0.6
171,647 - -3.3
171,669 - -0.9
171,778 + 11137 mRNA_2769 0.13 -0.9
171,787 - 11137 mRNA_2769 0.14 -1.7
171,920 - 11137 mRNA_2769 0.22 -2.0
171,928 + 11137 mRNA_2769 0.23 -0.3
172,075 + 11137 mRNA_2769 0.32 -1.5
172,216 + 11137 mRNA_2769 0.41 -2.5
172,216 - 11137 mRNA_2769 0.41 -3.0
172,217 + 11137 mRNA_2769 0.41 -2.2