Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2767

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2766: 11134 - KOG2827 Uncharacterized conserved protein, at 165361 to 166420 11134 mRNA_2767: 11135 - K10084 EDEM1 ER degradation enhancer, mannosidase alpha-like 1, at 166551 to 170333 11135 mRNA_2768: 11136 - K08681 pdxT, pdx2 5'-phosphate synthase pdxT subunit, at 170479 to 171341 11136

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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166,437 + 0.4
166,477 - -0.1
166,490 + -0.4
166,614 - 0.5
166,647 + -0.2
166,655 - 0.1
166,781 - 0.9
166,976 - 11135 mRNA_2767 0.11 -2.5
167,056 - 11135 mRNA_2767 0.13 -1.4
167,208 - 11135 mRNA_2767 0.17 -2.2
167,470 - 11135 mRNA_2767 0.24 -2.1
167,509 - 11135 mRNA_2767 0.25 -0.3
167,594 - 11135 mRNA_2767 0.28 -1.4
167,608 + 11135 mRNA_2767 0.28 -1.2
167,804 + 11135 mRNA_2767 0.33 -2.1
167,920 - 11135 mRNA_2767 0.36 -2.1
167,956 + 11135 mRNA_2767 0.37 -2.5
168,199 - 11135 mRNA_2767 0.44 -3.7
168,228 + 11135 mRNA_2767 0.44 0.3
169,393 - 11135 mRNA_2767 0.75 -0.7
169,766 - 11135 mRNA_2767 0.85 -2.3
169,779 + 11135 mRNA_2767 0.85 -0.8
169,810 - 11135 mRNA_2767 0.86 -0.9
170,517 - -1.3
170,669 - 11136 mRNA_2768 0.22 -0.6
170,811 - 11136 mRNA_2768 0.38 -2.1
170,952 + 11136 mRNA_2768 0.55 -1.6
170,988 + 11136 mRNA_2768 0.59 -1.3
171,119 - 11136 mRNA_2768 0.74 0.1
171,267 - -0.5
171,300 + -0.7