Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2752

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2751: 11119 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 136255 to 137508 11119 mRNA_2752: 11120 - HMMPfam-F-box-like-PF12937, at 138009 to 139329 11120 mRNA_2753: 11121 - HMMPfam-F-box-like-PF12937, at 139767 to 141011 11121

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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137,128 - 11119 mRNA_2751 0.70 -1.3
137,393 + -0.8
137,429 - -1.8
137,455 + -2.1
137,554 + -0.7
137,672 - -2.2
137,708 - -0.1
137,716 - -0.2
137,734 + -0.8
137,758 + -3.7
137,883 + -1.8
137,894 - -0.4
138,013 - -0.9
138,021 + -1.4
138,141 - 11120 mRNA_2752 0.10 -2.7
138,190 + 11120 mRNA_2752 0.14 -2.9
138,337 + 11120 mRNA_2752 0.25 -0.6
138,349 + 11120 mRNA_2752 0.26 -2.6
138,463 - 11120 mRNA_2752 0.34 -1.4
138,496 + 11120 mRNA_2752 0.37 -1.7
138,636 - 11120 mRNA_2752 0.47 -2.2
138,741 - 11120 mRNA_2752 0.55 0.4
138,870 - 11120 mRNA_2752 0.65 -0.6
139,172 - 11120 mRNA_2752 0.88 -2.1
139,193 - 11120 mRNA_2752 0.90 0.0
139,205 - -1.2
139,306 - -2.1
139,327 + -1.8
139,328 - -1.2
139,344 - -2.4
139,392 + -0.2
139,474 + -0.8
139,478 - -3.6
139,482 - 1.0
139,485 + -0.1
139,497 + -0.4
139,505 - -1.8
139,542 + -1.6
139,630 - -1.8
139,643 - -1.9
139,652 - -3.9
139,671 - -0.9
139,713 - 0.6
139,769 - -0.2
139,812 + -0.7
139,912 + 11121 mRNA_2753 0.12 -1.6
140,231 + 11121 mRNA_2753 0.37 -1.1