Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2750

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2749: 11117 - K02146 ATPeV0D, ATP6D V-type H+-transporting ATPase subunit d, at 132510 to 133901 11117 mRNA_2750: 11118 - K14962 WDR82, SWD2, CPS35 COMPASS component SWD2, at 134141 to 135893 11118 mRNA_2751: 11119 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 136255 to 137508 11119

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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133,825 - -0.4
133,912 + -3.1
133,967 - -1.9
134,050 - -2.1
134,136 + -0.7
134,163 - 1.0
134,180 - 0.8
134,316 - -1.4
134,545 + 11118 mRNA_2750 0.23 -3.4
134,784 + 11118 mRNA_2750 0.37 -0.8
135,197 - 11118 mRNA_2750 0.60 -3.0
135,216 - 11118 mRNA_2750 0.61 -3.5
135,219 - 11118 mRNA_2750 0.61 -1.0
135,366 - 11118 mRNA_2750 0.70 -0.3
135,367 + 11118 mRNA_2750 0.70 -0.5
135,372 - 11118 mRNA_2750 0.70 -1.1
135,637 + 11118 mRNA_2750 0.85 -1.4
135,653 + 11118 mRNA_2750 0.86 -1.9
135,653 + 11118 mRNA_2750 0.86 -1.0
135,699 - 11118 mRNA_2750 0.89 -2.1
135,699 + 11118 mRNA_2750 0.89 -2.3
135,824 - -0.6
135,923 + -2.0
135,935 + -3.0
135,949 - -2.7
135,951 - -1.3
135,961 - -1.1
135,961 - -2.5
135,964 + -1.3
135,966 + 2.3
135,978 - -2.6
135,999 + -2.3
136,107 - -1.9
136,117 - -2.2
136,151 - 0.2
136,263 - -0.9
136,264 - -1.3
136,272 + 0.2
136,432 + 11119 mRNA_2751 0.14 -1.8
136,439 + 11119 mRNA_2751 0.15 1.8
136,661 - 11119 mRNA_2751 0.32 0.1
136,712 - 11119 mRNA_2751 0.36 -0.5
136,725 + 11119 mRNA_2751 0.37 -0.4
136,738 - 11119 mRNA_2751 0.39 -1.4