Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2742

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2741: 11109 - HMMPfam-Telomeric single stranded DNA binding POT1/CDC13-PF02765,SUPERFAMILY--SSF50249, at 114533 to 117473 11109 mRNA_2742: 11110 - K18880 HCD1 very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase, at 117665 to 118794 11110 mRNA_2743: 11111 - KOG4491 Predicted membrane protein, at 119009 to 120330 11111

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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117,610 - -2.3
117,714 - -1.5
117,877 + 11110 mRNA_2742 0.19 1.1
117,888 - 11110 mRNA_2742 0.20 -0.0
118,526 + 11110 mRNA_2742 0.76 -0.9
118,612 - 11110 mRNA_2742 0.84 -1.0
118,613 + 11110 mRNA_2742 0.84 -0.3
118,627 + 11110 mRNA_2742 0.85 -2.9
118,769 + -0.6
118,890 - -1.3
118,893 - -0.5
118,894 - -1.6
118,896 + -0.6
118,897 + -3.9
118,910 - -2.2
118,916 - -1.4
118,959 - 0.9
119,078 + -1.9
119,078 - -2.4
119,322 + 11111 mRNA_2743 0.24 -3.6
119,528 - 11111 mRNA_2743 0.39 -2.7
119,657 - 11111 mRNA_2743 0.49 -2.2
119,743 - 11111 mRNA_2743 0.56 -1.1
119,788 - 11111 mRNA_2743 0.59 -0.6