Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2740

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2739: 11107 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 109775 to 112160 11107 mRNA_2740: 11108 - HMMPfam-SUR7/PalI family-PF06687, at 113053 to 114206 11108 mRNA_2741: 11109 - HMMPfam-Telomeric single stranded DNA binding POT1/CDC13-PF02765,SUPERFAMILY--SSF50249, at 114533 to 117473 11109

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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112,067 - -0.9
112,069 - -1.7
112,241 - -3.1
112,242 + -0.0
112,251 - -1.6
112,256 + -1.4
112,257 - -2.2
112,333 + -1.9
112,402 + -2.2
112,465 - 0.9
112,601 - 0.9
112,623 - 0.2
112,630 + -0.4
112,638 + 0.8
112,647 + -1.2
112,649 + -1.4
112,709 - -4.2
112,717 + -2.5
112,745 - -0.7
112,782 - -0.1
112,785 - -1.7
112,789 - -3.0
112,789 - -1.2
112,800 + -1.3
112,805 - -0.4
112,807 + 0.0
112,807 - -2.2
112,808 - -0.8
112,809 - -1.6
112,814 + 0.2
112,814 - -1.7
112,817 - 1.6
112,817 + -1.5
112,830 + -0.2
112,840 + 0.4
112,842 + -1.9
112,852 - -1.8
112,852 + -1.1
112,855 + -1.8
112,855 + -1.5
112,971 + -1.1
112,975 + -1.3
112,982 - -0.8
112,985 - -0.4
112,987 + -0.8
112,997 + -0.7
112,997 - -1.0
113,005 - -1.8
113,112 + -1.8
113,123 + -3.2
113,124 - 1.3
113,132 + -0.4
113,149 + -0.1
113,173 + 11108 mRNA_2740 0.10 0.0
113,471 + 11108 mRNA_2740 0.36 -1.9
113,726 - 11108 mRNA_2740 0.58 -0.0
114,001 + 11108 mRNA_2740 0.82 -2.1
114,005 - 11108 mRNA_2740 0.82 0.9
114,344 + 0.9
114,423 + 0.8
114,528 + 0.1
114,935 - 11109 mRNA_2741 0.14 -3.3