Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2733

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2732: 11100 - Hypothetical Protein, at 95429 to 95692 11100 mRNA_2733: 11101 - KOG0254 Predicted transporter (major facilitator superfamily), at 95902 to 98475 11101 mRNA_2734: 11102 - K14779 DDX52, ROK1 ATP-dependent RNA helicase DDX52/ROK1, at 98768 to 101128 11102

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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95,055 + -0.0
95,164 - -3.2
95,167 - 0.2
95,169 + -0.8
95,177 + -1.9
95,190 + -1.4
95,247 + 0.2
95,285 - -1.4
95,352 + -2.0
95,461 + 11100 mRNA_2732 0.12 -0.6
95,497 - 11100 mRNA_2732 0.26 -1.1
95,508 - 11100 mRNA_2732 0.30 -2.5
95,513 + 11100 mRNA_2732 0.32 -1.2
95,525 + 11100 mRNA_2732 0.36 -1.6
95,539 - 11100 mRNA_2732 0.42 -0.6
95,552 + 11100 mRNA_2732 0.47 -1.6
95,688 - -1.3
95,692 + -1.7
95,707 + -2.3
95,710 + -0.4
95,765 - -1.2
95,891 - -2.0
95,941 - -3.6
96,187 - 11101 mRNA_2733 0.11 -2.5
96,190 - 11101 mRNA_2733 0.11 -2.1
96,215 - 11101 mRNA_2733 0.12 -0.4
96,682 + 11101 mRNA_2733 0.30 -0.4
96,970 - 11101 mRNA_2733 0.41 0.8
97,330 - 11101 mRNA_2733 0.55 -0.9
97,556 + 11101 mRNA_2733 0.64 -1.8
97,561 + 11101 mRNA_2733 0.64 -2.7
97,583 - 11101 mRNA_2733 0.65 -0.7
97,706 + 11101 mRNA_2733 0.70 -0.6
97,830 - 11101 mRNA_2733 0.75 -0.5
97,920 - 11101 mRNA_2733 0.78 -2.3
97,925 + 11101 mRNA_2733 0.79 -1.0
97,928 - 11101 mRNA_2733 0.79 -3.2
97,958 - 11101 mRNA_2733 0.80 -0.3
97,965 + 11101 mRNA_2733 0.80 -1.4
97,972 + 11101 mRNA_2733 0.80 -0.5
97,979 + 11101 mRNA_2733 0.81 -0.5
97,986 + 11101 mRNA_2733 0.81 -4.2
98,034 + 11101 mRNA_2733 0.83 -2.4
98,248 - -0.5
98,251 + -0.1
98,450 + 0.1
98,582 + -3.7
98,709 + -0.9
98,839 + 0.4